Dimond J L, Bouma J V, Lafarga-De la Cruz F, Supernault K J, White T, Witting D A
Shannon Point Marine Center Western Washington University Anacortes Washington USA.
Puget Sound Restoration Fund Bainbridge Island Washington USA.
Evol Appl. 2024 Dec 3;17(12):e70040. doi: 10.1111/eva.70040. eCollection 2024 Dec.
Connectivity is integral to the dynamics of metapopulations through dispersal and gene flow, and understanding these processes is essential for guiding conservation efforts. Abalone, broadcast-spawning marine snails associated with shallow rocky habitats, have experienced widespread declines, and all seven North American species are threatened. We investigated the connectivity and population genomics of pinto/northern abalone (), the widest-ranging of abalone species. We employed reduced representation sequencing (RADseq) to generate single nucleotide polymorphism (SNP) data, assessing population connectivity and potential adaptive variation at 12 locations across the full range from Alaska to Mexico. Despite depleted populations, our analysis of over 6000 SNPs across nearly 300 individuals revealed that pinto abalone maintains a high genetic diversity with no evidence of a genetic bottleneck. Neutral population structure and isolation by distance were extremely weak, indicating panmixia across the species' range (global = 0.0021). Phylogenetic analysis, principal components analysis, and unsupervised clustering methods all supported a single genetic population. However, slight population differentiation was noted in the Salish Sea and Inside Passage regions, with evidence for higher barriers to dispersal relative to outer coastal areas. This north-central region may also represent the species' ancestral range based on relatively low population-specific values; the northern and southern extremes of the range likely represent range expansions. Outlier analysis did not identify consensus loci implicated in adaptive variation, suggesting limited adaptive differentiation. Our study sheds light on the evolutionary history and contemporary gene flow of this threatened species, providing key insights for conservation strategies, particularly in sourcing broodstock for ongoing restoration efforts.
通过扩散和基因流,连通性是集合种群动态的不可或缺部分,而理解这些过程对于指导保护工作至关重要。鲍鱼是与浅海岩石栖息地相关的散播产卵型海蜗牛,其数量已普遍下降,北美所有七种鲍鱼都受到威胁。我们研究了平托/北方鲍鱼( )的连通性和种群基因组学,该物种是分布范围最广的鲍鱼种类。我们采用简化基因组测序(RADseq)来生成单核苷酸多态性(SNP)数据,评估从阿拉斯加至墨西哥整个分布范围内12个地点的种群连通性和潜在适应性变异。尽管种群数量减少,但我们对近300个个体中6000多个SNP的分析表明,平托鲍鱼保持着较高的遗传多样性,没有遗传瓶颈的迹象。中性种群结构和距离隔离非常微弱,表明该物种分布范围内存在随机交配(全局 = 0.0021)。系统发育分析、主成分分析和无监督聚类方法均支持单一遗传种群。然而,在萨利希海和内航道地区发现了轻微的种群分化,有证据表明相对于外海岸地区,扩散障碍更高。基于相对较低的种群特异性 值,这个中北部地区可能也代表了该物种的祖先分布范围;该分布范围的北部和南部极端地区可能代表了范围扩张。离群值分析未识别出与适应性变异相关的一致性位点,表明适应性分化有限。我们的研究揭示了这种受威胁物种的进化历史和当代基因流,为保护策略提供了关键见解,特别是在为正在进行的恢复工作采购亲鱼方面。