Shi Menghan, Zhou Niu, Xiu Mengchen, Li Xiangzhi, Shan Fen, Chen Wu, Li Wanping, Chiang Cheng-Ming, Wu Xiaodong, Zhang Youming, Li Aiying, Cao Jingjing
State Key Laboratory of Microbial Technology, Microbial Technology Institute, Shandong University, Qingdao 266237, China.
Guangzhou Zoo, Guangzhou 510075, China.
Eng Microbiol. 2024 Apr 5;4(2):100149. doi: 10.1016/j.engmic.2024.100149. eCollection 2024 Jun.
African swine fever virus (ASFV) infection poses enormous threats and challenges to the global pig industry; however, no effective vaccine is available against ASFV, attributing to the huge viral genome (approximately189 kb) and numerous encoding products (>150 genes) due to the limited understanding on the molecular mechanisms of viral pathogenesis. Elucidating the host-factor/viral-protein interaction network will reveal new targets for developing novel antiviral therapies. Using proteomic analysis, we identified 255 cellular proteins that interact with the ASFV-encoded pE301R protein when transiently expressed in HEK293T cells. Gene ontology (GO) annotation, Kyoto Encyclopedia of Genes and Genomes (KEGG) database enrichment, and protein-protein interaction (PPI) network analyses revealed that pE301R-interacting host proteins are potentially involved in various biological processes, including protein translation and folding, response to stimulation, and mitochondrial transmembrane transport. The interactions of two putative cellular proteins (apoptosis inducing factor mitochondria associated 1 (AIFM1) and vimentin (VIM)) with pE301R-apoptosis inducing factor have been verified by co-immunoprecipitation. Our study revealed the inhibitory role of pE301R in interferon (IFN) induction that involves VIM sequestration by pE301R, identified interactions between ASFV pE301R and cellular proteins, and predicted the potential function of pE301R and its associated biological processes, providing valuable information to enhance our understanding of viral protein function, pathogenesis, and potential candidates for the prevention and control of ASFV infection.
非洲猪瘟病毒(ASFV)感染对全球养猪业构成了巨大威胁与挑战;然而,由于对病毒致病分子机制的了解有限,针对ASFV尚无有效的疫苗,这归因于其巨大的病毒基因组(约189 kb)和众多编码产物(>150个基因)。阐明宿主因子/病毒蛋白相互作用网络将揭示开发新型抗病毒疗法的新靶点。通过蛋白质组学分析,我们鉴定出255种细胞蛋白,这些蛋白在HEK293T细胞中瞬时表达时与ASFV编码的pE301R蛋白相互作用。基因本体(GO)注释、京都基因与基因组百科全书(KEGG)数据库富集分析以及蛋白质-蛋白质相互作用(PPI)网络分析表明,与pE301R相互作用的宿主蛋白可能参与多种生物学过程,包括蛋白质翻译与折叠、对刺激的反应以及线粒体跨膜运输。两种假定的细胞蛋白(凋亡诱导因子线粒体相关蛋白1(AIFM1)和波形蛋白(VIM))与pE301R - 凋亡诱导因子的相互作用已通过免疫共沉淀得到验证。我们的研究揭示了pE301R在干扰素(IFN)诱导中的抑制作用,该作用涉及pE301R对VIM的隔离,鉴定了ASFV pE301R与细胞蛋白之间的相互作用,并预测了pE301R的潜在功能及其相关生物学过程,为增强我们对病毒蛋白功能、发病机制以及ASFV感染防控潜在候选物的理解提供了有价值的信息。