Lee Seoung Rak, Gallant Étienne, Seyedsayamdost Mohammad R
Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States.
College of Pharmacy and Research Institute for Drug Development, Pusan National University, Busan 46241, Republic of Korea.
Biochemistry. 2025 Jan 7;64(1):20-25. doi: 10.1021/acs.biochem.4c00659. Epub 2024 Dec 10.
It is now well-established that microbial genomes carry sparingly expressed biosynthetic gene clusters (BGCs) that need to be induced in order to characterize their products. To do so, we herein subjected two well-known producers, and , to high-throughput elicitor screening (HiTES), an emerging approach for accessing the products of these "cryptic" BGCs. Both organisms have previously been examined extensively in liquid cultures. We therefore applied HiTES on agar and found several novel natural products that are only produced in this format and not in liquid cultures. Most notably we found two metabolites, termed burkethyl A and B, that contain an unusual -ethylbenzoyl group and for which we identified the cognate BGC using bioinformatic and genetic studies. Our results indicate that agar-based HiTES is a promising approach for natural product discovery and are in line with the notion that even "drained" strains remain sources of new metabolites as long as alternative approaches are employed.
现已明确,微生物基因组携带表达稀少的生物合成基因簇(BGCs),为了表征其产物,需要对这些基因簇进行诱导。为此,我们在此对两种著名的产生菌进行了高通量诱导子筛选(HiTES),这是一种用于获取这些“隐秘”BGCs产物的新兴方法。此前已对这两种生物体在液体培养中进行了广泛研究。因此,我们在琼脂上应用HiTES,发现了几种仅以这种形式产生而不在液体培养中产生的新型天然产物。最值得注意的是,我们发现了两种代谢物,称为伯克乙基A和B,它们含有一个不寻常的乙基苯甲酰基,我们通过生物信息学和遗传学研究确定了其同源BGC。我们的结果表明,基于琼脂的HiTES是一种有前景的天然产物发现方法,并且与以下观点一致:只要采用替代方法,即使是“枯竭”的菌株仍然是新代谢物的来源。