鉴定介导牛出生后瘤胃生长和功能成熟的转录调节因子和信号通路。
Identification of transcriptional regulators and signaling pathways mediating postnatal rumen growth and functional maturation in cattle.
作者信息
Pokhrel Binod, Tan Zhendong, Jiang Honglin
机构信息
School of Animal Sciences, Virginia Tech, Blacksburg, VA 24061, USA.
出版信息
J Anim Sci. 2025 Jan 4;103. doi: 10.1093/jas/skae367.
The rumen plays an essential role in the physiology and health of ruminants. The rumen undergoes substantial changes in size and function from birth to adulthood. The cellular and molecular mechanisms underlying these changes are not clear. This study aimed to identify the transcription factors (TFs) and signaling pathways mediating these changes in cattle. We found that the ratios of the emptied rumen, reticulum, omasum, and abomasum to body weight in adult steers were 4.8 (P < 0.01), 3.1 (P < 0.01), 6.0 (P < 0.01), and 0.8 (P = 0.9) times those in neonatal calves, respectively. The length of rumen papillae and the thickness of rumen epithelium, tunica mucosa and submucosa, tunica muscularis, and tunica serosa increased 7.4-, 2.0-, 3.0-, 2.9-, and 4.6-fold (P < 0.01 for all), respectively, from neonatal calves to adult steers. However, the density of rumen papillae was lower in adult steers than in neonatal calves (P < 0.05). The size of rumen epithelial cells was not different between neonatal calves and adult steers (P = 0.57). RNA sequencing identified 2,922 genes differentially expressed in the rumen between neonatal calves and adult steers. Functional enrichment analyses revealed that organ development, blood vessel development, Ras signaling, and Wnt signaling were among the functional terms enriched in genes downregulated in adult steers vs. neonatal calves and that fatty acid metabolism, immune responses, PPAR signaling, and Rap1 signaling were among those enriched in genes upregulated in adult steers vs. neonatal calves. Serum response factor (SRF), interferon regulatory factor 4, and purine-rich single-stranded DNA-binding protein alpha were among the major candidate TFs controlling the expression of genes upregulated, while TCF4, inhibitor of DNA binding 4, and snail family transcriptional repressor 2 were among those controlling the expression of genes downregulated in adult steers vs. neonatal calves. Taken together, these results suggest that the rumen grows by increasing the number, not the size, of cells from birth to adulthood, that the absorptive, metabolic, immune, and motility functions of the rumen are acquired or significantly enhanced during the postnatal life, and that the changes in rumen size and function from birth to adulthood are mediated by many candidate TFs, including SRF and TCF4, and many candidate signaling pathways, including the PPAR and Wnt signaling pathways.
瘤胃在反刍动物的生理和健康中起着至关重要的作用。从出生到成年,瘤胃在大小和功能上会发生显著变化。这些变化背后的细胞和分子机制尚不清楚。本研究旨在确定介导牛瘤胃这些变化的转录因子(TFs)和信号通路。我们发现,成年公牛的空瘤胃、网胃、瓣胃和皱胃与体重的比值分别是新生犊牛的4.8倍(P < 0.01)、3.1倍(P < 0.01)、6.0倍(P < 0.01)和0.8倍(P = 0.9)。从新生犊牛到成年公牛,瘤胃乳头长度、瘤胃上皮、黏膜层、黏膜下层、肌层和浆膜层厚度分别增加了7.4倍、2.0倍、3.0倍、2.9倍和4.6倍(所有P均< 0.01)。然而,成年公牛瘤胃乳头的密度低于新生犊牛(P < 0.05)。新生犊牛和成年公牛的瘤胃上皮细胞大小没有差异(P = 0.57)。RNA测序鉴定出2922个在新生犊牛和成年公牛瘤胃中差异表达的基因。功能富集分析表明,器官发育、血管发育、Ras信号传导和Wnt信号传导等功能术语在成年公牛与新生犊牛相比下调的基因中富集,而脂肪酸代谢、免疫反应、PPAR信号传导和Rap1信号传导等在成年公牛与新生犊牛相比上调的基因中富集。血清反应因子(SRF)、干扰素调节因子4和富含嘌呤的单链DNA结合蛋白α是控制上调基因表达的主要候选TFs,而TCF4、DNA结合抑制剂4和蜗牛家族转录抑制因子2是控制成年公牛与新生犊牛相比下调基因表达的TFs。综上所述,这些结果表明,从出生到成年,瘤胃通过增加细胞数量而非大小来生长,瘤胃的吸收、代谢、免疫和运动功能在出生后获得或显著增强,并且从出生到成年瘤胃大小和功能的变化由许多候选TFs介导,包括SRF和TCF4,以及许多候选信号通路,包括PPAR和Wnt信号通路。
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