Pilala Katerina-Marina, Panoutsopoulou Konstantina, Papadimitriou Maria-Alexandra, Soureas Konstantinos, Scorilas Andreas, Avgeris Margaritis
Department of Biochemistry and Molecular Biology, Faculty of Biology, National and Kapodistrian University of Athens, Athens, Greece.
Department of Biochemistry and Molecular Biology, Faculty of Biology, National and Kapodistrian University of Athens, Athens, Greece; Laboratory of Clinical Biochemistry - Molecular Diagnostics, Second Department of Pediatrics, School of Medicine, National and Kapodistrian University of Athens, "P. & A. Kyriakou" Children's Hospital, Athens, Greece.
Mol Ther. 2025 Feb 5;33(2):447-464. doi: 10.1016/j.ymthe.2024.12.003. Epub 2024 Dec 9.
The orchestration of dynamic epigenetic and epitranscriptomic modifications is pivotal for the fine-tuning of gene expression. However, these modifications are traditionally examined independently. Recent compelling studies have disclosed an interesting communication and interplay between m6A RNA methylation (m6A epitranscriptome) and epigenetic modifications, enabling the formation of feedback circuits and cooperative networks. Intriguingly, the interaction between m6A and DNA methylation machinery, coupled with the crosstalk between m6A RNA and histone modifications shape the transcriptional profile and translational efficiency. Moreover, m6A modifications interact also with non-coding RNAs, modulating their stability, abundance, and regulatory functions. In the light of these findings, m6A imprinting acts as a versatile checkpoint, linking epigenetic and epitranscriptomic layers toward a multilayer and time-dependent control of gene expression and cellular homeostasis. The scope of the present review is to decipher the m6A-coordinated circuits with DNA imprinting, chromatin architecture, and non-coding RNAs networks in normal physiology and carcinogenesis. Ultimately, we summarize the development of innovative CRISPR-dCas engineering platforms fused with m6A catalytic components (m6A writers or erasers) to achieve transcript-specific editing of m6A epitranscriptomes that can create new insights in modern RNA therapeutics.
动态表观遗传和表转录组修饰的编排对于基因表达的精细调控至关重要。然而,传统上这些修饰是独立研究的。最近的一些引人注目的研究揭示了m6A RNA甲基化(m6A表转录组)与表观遗传修饰之间有趣的交流和相互作用,从而形成了反馈回路和协同网络。有趣的是,m6A与DNA甲基化机制之间的相互作用,以及m6A RNA与组蛋白修饰之间的相互作用,塑造了转录谱和翻译效率。此外,m6A修饰还与非编码RNA相互作用,调节它们的稳定性、丰度和调控功能。鉴于这些发现,m6A印记作为一个多功能检查点,将表观遗传和表转录组层面联系起来,实现对基因表达和细胞稳态的多层且依赖时间的控制。本综述的范围是解读在正常生理和致癌过程中,m6A与DNA印记、染色质结构和非编码RNA网络协调的回路。最终,我们总结了与m6A催化成分(m6A写入器或擦除器)融合的创新CRISPR-dCas工程平台的发展,以实现对m6A表转录组的转录本特异性编辑,这可为现代RNA治疗带来新的见解。