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[RNA甲基化的序列和时间依赖性操作]

[Sequence- and Timing- Dependent Manipulation of RNA Methylation].

作者信息

Imanishi Miki

机构信息

Institute for Chemical Research, Kyoto University.

出版信息

Yakugaku Zasshi. 2025;145(7):609-616. doi: 10.1248/yakushi.24-00209-4.

Abstract

In recent years, chemical modifications of RNA, known as the epitranscriptome, have been shown to influence not only the regulation of gene expression but also diseases such as neurodegenerative disorders and viral infections. Among them, N-methyladenosine (mA), which is highly abundant in transcripts, has been shown to regulate RNA stability, localization, and translation and has also been implicated in development, differentiation, and cancer. However, there are limitations in understanding the role of individual mAs in disease and biological phenomena using enzymatic knockdown methods that alter RNA methylation levels throughout the cell; if RNA methylation states can be selectively regulated by RNA sequences, the function of RNA methylation in a variety of biological phenomena can be elucidated. With this background, systems have been developed to selectively and temporally control the methylation state of specific adenosine. Using RNA-binding proteins that can freely alter the sequence of the RNA to which they bind, we created sequence-specific demethylases and methylases and demonstrated that these artificial proteins can regulate the methylation state of adenosine near the target sequence of the RNA-binding protein. In addition, the switching of methylation and demethylation activities by external stimuli is being developed in combination with external stimulus-dependent heterodimeric systems. In this review, developments in molecular tools for the sequence-selective regulation of epitranscriptomes are presented.

摘要

近年来,被称为表转录组的RNA化学修饰不仅已被证明会影响基因表达调控,还会影响诸如神经退行性疾病和病毒感染等疾病。其中,转录本中高度丰富的N6-甲基腺苷(m6A)已被证明可调节RNA稳定性、定位和翻译,还与发育、分化及癌症有关。然而,使用酶促敲低方法改变整个细胞的RNA甲基化水平来理解单个m6A在疾病和生物学现象中的作用存在局限性;如果RNA甲基化状态可以由RNA序列选择性调控,那么RNA甲基化在各种生物学现象中的功能就可以阐明。在此背景下,已开发出用于选择性和暂时控制特定腺苷甲基化状态的系统。利用能够自由改变其所结合RNA序列的RNA结合蛋白,我们创建了序列特异性脱甲基酶和甲基化酶,并证明这些人工蛋白可以调节RNA结合蛋白靶序列附近腺苷的甲基化状态。此外,正在结合外部刺激依赖性异二聚体系统开发通过外部刺激实现甲基化和脱甲基活性的切换。在本综述中,介绍了用于表转录组序列选择性调控的分子工具的进展。

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