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中国南方广东产的川苔草科(Podostemaceae)一新种,重新界定了该科内部的系统发育关系。

 (Podostemaceae), a new species from Guangdong, South China, redefining the phylogenetic relationships within .

作者信息

Zhang Miao, Liu Xiu-Ting, Tian Min, Chen Zhang-Xue, Huang Ying-Lin, Chen Guo-Di, Chen Bing-Hua

机构信息

College of Life Sciences, Fujian Normal University, Fuzhou 350117, China.

Ting Jie Natural History Studio, Guangzhou 510000, China.

出版信息

PhytoKeys. 2024 Dec 2;249:231-249. doi: 10.3897/phytokeys.249.140342. eCollection 2024.

DOI:10.3897/phytokeys.249.140342
PMID:39659963
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11629083/
Abstract

This paper introduces , a newly identified species that enriches our understanding of the diversity of the Podostemaceae in East Asia. Distinctive in its morphological traits, this species is characterized by the region's longest flowering shoots and exhibits a high number of elongated leaves per cluster, along with relatively slender roots. Phylogenetic analyses using Maximum Likelihood and Bayesian Inference methods on plastome and sequences confirm as a distinct species. It forms a clade with , its closest relative, together branching off from . The plastome of is 132,818 bp in length, comprising two inverted repeat regions of 20,881 bp, which are separated by large and small single-copy regions of 78,713 and 12,343 bp, respectively. Genetic analysis reveals the extensive loss of the and genes in the chloroplast genome, a trait common to the Podostemaceae, suggesting adaptations to environmental conditions or gene transfers to nuclear or mitochondrial genomes. This study improves the clarity of phylogenetic relationships in previous studies and underscores the importance of continued taxonomic and phylogenetic research.

摘要

本文介绍了一种新发现的物种,它丰富了我们对东亚川苔草科植物多样性的认识。该物种在形态特征上独具特色,其特点是该地区最长的花茎,每簇有大量细长的叶子,以及相对纤细的根。利用最大似然法和贝叶斯推断法对质体基因组和序列进行的系统发育分析证实该物种是一个独特的物种。它与最亲近的近缘种形成一个分支,共同从分支出来。该物种的质体基因组长度为132,818 bp,包括两个长度为20,881 bp的反向重复区域,分别由长度为78,713 bp和12,343 bp的大单拷贝区域和小单拷贝区域隔开。遗传分析揭示了叶绿体基因组中rpl20和rps12基因的大量缺失,这是川苔草科植物共有的特征,表明其对环境条件的适应或基因转移到核基因组或线粒体基因组。本研究提高了先前研究中系统发育关系的清晰度,并强调了持续进行分类学和系统发育研究的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e066/11629083/176a18811862/phytokeys-249-231_article-140342__-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e066/11629083/176a18811862/phytokeys-249-231_article-140342__-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e066/11629083/176a18811862/phytokeys-249-231_article-140342__-g001.jpg

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本文引用的文献

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Plant Divers. 2024 Feb 7;46(3):421-424. doi: 10.1016/j.pld.2024.02.002. eCollection 2024 May.
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Tree Visualization By One Table (tvBOT): a web application for visualizing, modifying and annotating phylogenetic trees.树状图可视化工具 (tvBOT):一个用于可视化、修改和注释系统发育树的网络应用程序。
Nucleic Acids Res. 2023 Jul 5;51(W1):W587-W592. doi: 10.1093/nar/gkad359.
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 (Podostemaceae), a new species from Fujian, China, based on morphological and genomic evidence.
基于形态学和基因组证据描述了中国福建川苔草科(Podostemaceae)一新种。
PhytoKeys. 2022 Jun 13;199:167-186. doi: 10.3897/phytokeys.199.85679. eCollection 2022.
4
The extremely reduced, diverged and reconfigured plastomes of the largest mycoheterotrophic orchid lineage.最大的菌根异养兰花谱系的极度缩小、分化和重排质体基因组。
BMC Plant Biol. 2022 Sep 20;22(1):448. doi: 10.1186/s12870-022-03836-x.
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PhytoKeys. 2022 Apr 20;195:1-13. doi: 10.3897/phytokeys.195.82789. eCollection 2022.
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 (Podostemaceae), a new species from South East China based on morphological and genomic data.基于形态学和基因组数据描述的中国东南部川苔草科(Podostemaceae)一新物种。
PhytoKeys. 2022 Apr 18;194:105-122. doi: 10.3897/phytokeys.194.83080. eCollection 2022.
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Elevated mutation rates underlie the evolution of the aquatic plant family Podostemaceae.升高的突变率为水生植物荷叶蕨科的进化提供了基础。
Commun Biol. 2022 Jan 20;5(1):75. doi: 10.1038/s42003-022-03003-w.
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Comparative Analysis of Plastid Genomes in the Non-photosynthetic Genus Reveals Ongoing Gene Set Reduction.非光合属质体基因组的比较分析揭示了基因集的持续减少。
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Plastomes of eight Ligusticum species: characterization, genome evolution, and phylogenetic relationships.八种当归属植物的质体基因组:特征、基因组进化和系统发育关系。
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