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用于评估自闭症谱系障碍生物标志物的无监督降维技术

Unsupervised Dimensionality Reduction Techniques for the Assessment of ASD Biomarkers.

作者信息

Jacokes Zachary, Adoremos Ian, Hussain Arham Rameez, Newman Benjamin T, Pelphrey Kevin A, Van Horn John Darrell

机构信息

School of Data Science, University of Virginia, Charlottesville, VA 22903, United States of America.

College of Computer, Mathematical, and Natural Sciences, University of Maryland, Charlottesville, VA 22903, United States of America.

出版信息

Pac Symp Biocomput. 2025;30:614-630. doi: 10.1142/9789819807024_0044.

DOI:10.1142/9789819807024_0044
PMID:39670400
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12262183/
Abstract

Autism Spectrum Disorder (ASD) encompasses a range of developmental disabilities marked by differences in social functioning, cognition, and behavior. Both genetic and environmental factors are known to contribute to ASD, yet the exact etiological factors remain unclear. Developing integrative models to explore the effects of gene expression on behavioral and cognitive traits attributed to ASD can uncover environmental and genetic interactions. A notable aspect of ASD research is the sex-wise diagnostic disparity: males are diagnosed more frequently than females, which suggests potential sex-specific biological influences. Investigating neuronal microstructure, particularly axonal conduction velocity offers insights into the neural basis of ASD. Developing robust models that evaluate the vast multidimensional datasets generated from genetic and microstructural processing poses significant challenges. Traditional feature selection techniques have limitations; thus, this research aims to integrate principal component analysis (PCA) with supervised machine learning algorithms to navigate the complex data space. By leveraging various neuroimaging techniques and transcriptomics data analysis methods, this methodology builds on traditional implementations of PCA to better contextualize the complex genetic and phenotypic heterogeneity linked to sex differences in ASD and pave the way for tailored interventions.

摘要

自闭症谱系障碍(ASD)涵盖一系列发育障碍,其特征是社交功能、认知和行为存在差异。已知遗传和环境因素都会导致ASD,但确切的病因仍不清楚。开发综合模型以探索基因表达对ASD所致行为和认知特征的影响,可以揭示环境与基因的相互作用。ASD研究的一个显著方面是性别诊断差异:男性被诊断出ASD的频率高于女性,这表明可能存在特定性别的生物学影响。研究神经元微观结构,特别是轴突传导速度,有助于深入了解ASD的神经基础。开发强大的模型来评估从基因和微观结构处理中生成的大量多维数据集面临重大挑战。传统的特征选择技术存在局限性;因此,本研究旨在将主成分分析(PCA)与监督机器学习算法相结合,以在复杂的数据空间中导航。通过利用各种神经成像技术和转录组学数据分析方法,该方法基于PCA的传统实现方式,更好地将与ASD性别差异相关的复杂遗传和表型异质性置于具体情境中,并为量身定制的干预措施铺平道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38a8/12262183/7151943de9ee/nihms-2038225-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38a8/12262183/de1eb9b5570a/nihms-2038225-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38a8/12262183/df717d280dd7/nihms-2038225-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38a8/12262183/7151943de9ee/nihms-2038225-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38a8/12262183/de1eb9b5570a/nihms-2038225-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38a8/12262183/df717d280dd7/nihms-2038225-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38a8/12262183/7151943de9ee/nihms-2038225-f0003.jpg

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本文引用的文献

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Conduction velocity, G-ratio, and extracellular water as microstructural characteristics of autism spectrum disorder.传导速度、G 比值和细胞外液作为自闭症谱系障碍的微观结构特征。
PLoS One. 2024 Apr 17;19(4):e0301964. doi: 10.1371/journal.pone.0301964. eCollection 2024.
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Rare X-linked variants carry predominantly male risk in autism, Tourette syndrome, and ADHD.罕见的 X 连锁变异主要携带男性自闭症、抽动秽语综合征和 ADHD 的风险。
Nat Commun. 2023 Dec 6;14(1):8077. doi: 10.1038/s41467-023-43776-0.
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An intracellular isotropic diffusion signal is positively associated with pubertal development in white matter.
细胞内各向同性扩散信号与白质的青春期发育呈正相关。
Dev Cogn Neurosci. 2023 Oct;63:101301. doi: 10.1016/j.dcn.2023.101301. Epub 2023 Sep 15.
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Prevalence and Characteristics of Autism Spectrum Disorder Among Children Aged 8 Years - Autism and Developmental Disabilities Monitoring Network, 11 Sites, United States, 2020.2020 年,美国 11 个监测点自闭症和发育障碍监测网络 8 岁儿童自闭症谱系障碍的流行率和特征。
MMWR Surveill Summ. 2023 Mar 24;72(2):1-14. doi: 10.15585/mmwr.ss7202a1.
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Connectome-wide Mega-analysis Reveals Robust Patterns of Atypical Functional Connectivity in Autism.全连接组超大规模分析揭示了自闭症中功能连接的典型模式。
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Linear discriminant analysis of phenotypic data for classifying autism spectrum disorder by diagnosis and sex.用于按诊断和性别对自闭症谱系障碍进行分类的表型数据线性判别分析。
Front Neurosci. 2022 Nov 16;16:1040085. doi: 10.3389/fnins.2022.1040085. eCollection 2022.
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The inferior frontal sulcus: Cortical segregation, molecular architecture and function.下额沟:皮质分离、分子结构与功能。
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rs-fMRI and machine learning for ASD diagnosis: a systematic review and meta-analysis.rs-fMRI 和机器学习在 ASD 诊断中的应用:系统评价和荟萃分析。
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