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基于双吲哚的三嗪衍生物作为2型糖尿病中人类醛糖还原酶靶点的先导化合物探索:计算机模拟方法

Exploration of leads from bis-indole based triazine derivatives targeting human aldose reductase in diabetic type 2: in-silico approaches.

作者信息

Roney Miah, Issahaku Abdul Rashid, Uddin Md Nazim, Wilhelm Anke, Aluwi Mohd Fadhlizil Fasihi Mohd

机构信息

Faculty of Industrial Sciences and Technology, Universiti Malaysia Pahang Al-Sultan Abdullah, Lebuhraya Tun Razak, Gambang, 26300 Kuantan, Pahang Malaysia.

Centre for Bio-Aromatic Research, Universiti Malaysia Pahang Al-Sultan Abdullah, Lebuhraya Tun Razak, Gambang, 26300 Kuantan, Pahang Malaysia.

出版信息

3 Biotech. 2025 Jan;15(1):5. doi: 10.1007/s13205-024-04178-1. Epub 2024 Dec 11.

Abstract

Diabetes mellitus (DM) poses a major global healthcare challenge, highlighting the need for new treatments beyond current options. Currently available drugs have side effects including weight gain, nausea, vomiting, diarrhea, insulin resistance etc. Therefore, given the benefits of indole derivatives in diabetes and the lack of computational studies on bis-indole-based triazine derivatives with aldose reductase (AR), this study employs in-silico analysis to explore their potential as type-2 diabetes treatments. Based on the Differential Expression analysis, the human aldose reductase (HAR) encoding gene AKR1B1 showed overexpression in GSE30122 diabetes patients (Log2FC = 0.62,  < 0.01). Moreover, the compounds 2-((5,6-di(1H-indol-3-yl)-1,2,4-triazin-3-yl)thio)-1-(3-hydroxy-5-methylphenyl)ethan-1-one (4) and 2-((5,6-di(1H-indol-3-yl)-1,2,4-triazin-3-yl)thio)-1-(4-nitrophenyl)ethan-1-one (8) were identified as leading candidates, showing binding energies of - 62.12, - 81.73 kcal/mol and - 57.19, - 85.97 kcal/mol, respectively. Docking, MM/GBSA screening, molecular dynamics (MD) simulations, PCA, and post-MM/GBSA analysis confirmed their stability and favorable binding compared to the apo protein and control. Further in-vitro, in-vivo, and clinical studies are required to validate their therapeutic potential.

摘要

糖尿病(DM)是一项重大的全球医疗保健挑战,凸显了除现有治疗方案之外开发新疗法的必要性。目前可用的药物存在包括体重增加、恶心、呕吐、腹泻、胰岛素抵抗等副作用。因此,鉴于吲哚衍生物对糖尿病的益处以及缺乏对基于双吲哚的三嗪衍生物与醛糖还原酶(AR)的计算研究,本研究采用计算机模拟分析来探索它们作为2型糖尿病治疗药物的潜力。基于差异表达分析,编码人醛糖还原酶(HAR)的基因AKR1B1在GSE30122糖尿病患者中表现出过表达(Log2FC = 0.62,<0.01)。此外,化合物2 - ((5,6 - 二(1H - 吲哚 - 3 - 基)-1,2,4 - 三嗪 - 3 - 基)硫代)-1-(3 - 羟基 - 5 - 甲基苯基)乙 - 1 - 酮(4)和2 - ((5,6 - 二(1H - 吲哚 - 3 - 基)-1,2,4 - 三嗪 - 3 - 基)硫代)-1-(4 - 硝基苯基)乙 - 1 - 酮(8)被确定为主要候选药物,其结合能分别为 - 62.12、- 81.73 kcal/mol和 - 57.19、- 85.97 kcal/mol。对接、MM/GBSA筛选、分子动力学(MD)模拟、主成分分析(PCA)以及MM/GBSA后分析证实,与脱辅基蛋白和对照相比,它们具有稳定性和良好的结合。需要进一步的体外、体内和临床研究来验证它们的治疗潜力。

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