Qian Yuxuan, Tong Jing, Liu Ning, Wang Baoju, Wu Zhanhui
Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Science, Beijing 100097, China.
Key Laboratory of Urban Agriculture (North) of Ministry of Agriculture and Rural Affairs, Beijing 100097, China.
Int J Mol Sci. 2024 Nov 28;25(23):12822. doi: 10.3390/ijms252312822.
Pepper ( L.) is a popular vegetable in people's daily lives. During pepper growth, calcium (Ca) is an essential macronutrient, and calcium-transporting ATPase (ACA/ECA) is a vital protein for calcium transport. However, reports on the / gene family in the pepper genome are lacking. Hence, we used various bioinformatics methods to identify the / gene family in pepper. We identified eleven /-family genes in pepper. The chromosomal distribution, phylogenetic evolution, characteristics, gene collinearity, gene and protein structures, cis-acting elements, and specific expression patterns of /s were analyzed, revealing evolutionary relationships and correlations between /s and other species (Arabidopsis, rice, and tomato). The experimental results indicate that are stable and hydrophobic proteins, with each of the eleven proteins containing all ten motifs. Eleven / genes are unevenly distributed on the eight chromosomes, and they substantially differ in the number of exons. We found a close correlation between the /s of pepper, Arabidopsis, and tomato. The / genes contain various plant-hormone-, growth-, and stress-related cis-acting elements. The qRT-PCR results indicate that the expression levels of the eleven /s exhibit differential temporal expression patterns under various exogenous Ca concentrations. These results provide a theoretical basis for further studying the function of the pepper / gene family and valuable information for identifying and screening genes for pepper stress tolerance breeding.
辣椒(L.)是人们日常生活中常见的蔬菜。在辣椒生长过程中,钙(Ca)是一种必需的大量元素,而钙转运ATP酶(ACA/ECA)是钙运输的重要蛋白质。然而,关于辣椒基因组中/基因家族的报道却很少。因此,我们运用多种生物信息学方法来鉴定辣椒中的/基因家族。我们在辣椒中鉴定出了11个/-家族基因。分析了/基因的染色体分布、系统发育进化、特征、基因共线性、基因和蛋白质结构、顺式作用元件以及特异性表达模式,揭示了/基因与其他物种(拟南芥、水稻和番茄)之间的进化关系和相关性。实验结果表明,/基因编码的是稳定的疏水蛋白,11种/蛋白均包含所有10个基序。11个/基因在8条染色体上分布不均,外显子数量也有很大差异。我们发现辣椒、拟南芥和番茄的/基因之间存在密切的相关性。/基因含有多种与植物激素、生长和胁迫相关的顺式作用元件。qRT-PCR结果表明,在不同外源钙浓度下,11个/基因的表达水平呈现出不同的时间表达模式。这些结果为进一步研究辣椒/基因家族的功能提供了理论依据,也为辣椒耐逆育种的基因鉴定和筛选提供了有价值的信息。