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一种用于基于拉曼光谱的脑胶质瘤分级的可解释多尺度卷积注意力残差神经网络。

An interpretable multi-scale convolutional attention residual neural network for glioma grading with Raman spectroscopy.

作者信息

Li Qingbo, Shao Xupeng, Zhou Yan, Wang Yinyan, Yan Zeya, Bao Hongbo, Zhou Lipu

机构信息

School of Instrumentation and Optoelectronic Engineering, Precision Opto-Mechatronics Technology Key Laboratory of Education Ministry, Beihang University, Beijing 100191, China.

Department of Neurosurgery, Air Force Medical Center, PLA, Beijing 100142, China.

出版信息

Anal Methods. 2025 Jan 23;17(4):677-687. doi: 10.1039/d4ay02068e.

Abstract

Since the malignancy of gliomas varies with their grade, classifying gliomas of different grades can assist doctors in developing personalized surgical plans during surgery, thereby improving the prognosis. Raman spectroscopy is an optical method for real-time glioma diagnosis. However, high-grade glioma (HGG, WHO grades III and IV), low-grade glioma (LGG, WHO grades I and II) and normal tissue have similar biochemical components, leading to similar spectral characteristics. This similarity reduces classification accuracy when using traditional machine learning methods. In contrast, deep learning offers enhanced feature extraction capabilities without the need for extensive feature engineering. Nevertheless, the diversity in the scale of spectral features presents challenges in designing a neural network that effectively adapts to these characteristics. To address these issues, this paper proposes a Multi-Scale Convolutional Attention Residual Network (M-SCA ResNet), which incorporates multi-scale channel and spatial attention mechanisms along with residual structures to improve the model's feature extraction capabilities. The algorithm presented in this study, was employed to classify HGG, LGG, and healthy tissue and was compared with conventional machine learning and neural networks. The results indicate that the M-SCA ResNet achieved an identification accuracy exceeding 85% for all three tissue types, along with the highest weighted -score. Furthermore, to enhance the interpretability of deep learning models, Gradient-weighted Class Activation Mapping (Grad-CAM) was utilized to extract and visualize key Raman shifts that significantly contribute to classification. Most of the extracted Raman shifts correspond to characteristic peaks of brain tissue which have been demonstrated to be effective in distinguishing between glioma of different grades and normal tissue in previous studies. This finding proves the strong correlation between the feature extraction capabilities of the M-SCA ResNet and the biomolecular characteristics of various tissues. The experiments conducted in this study validate the feasibility of using the M-SCA ResNet for glioma grading and provide valuable support for formulating subsequent surgical and treatment plans, indicating its promising application in and spectral diagnosis of glioma grading.

摘要

由于神经胶质瘤的恶性程度随分级而异,对不同分级的神经胶质瘤进行分类有助于医生在手术期间制定个性化的手术方案,从而改善预后。拉曼光谱是一种用于神经胶质瘤实时诊断的光学方法。然而,高级别神经胶质瘤(HGG,世界卫生组织III级和IV级)、低级别神经胶质瘤(LGG,世界卫生组织I级和II级)与正常组织具有相似的生化成分,导致光谱特征相似。这种相似性在使用传统机器学习方法时会降低分类准确率。相比之下,深度学习提供了增强的特征提取能力,无需进行广泛的特征工程。然而,光谱特征尺度的多样性给设计有效适应这些特征的神经网络带来了挑战。为了解决这些问题,本文提出了一种多尺度卷积注意力残差网络(M-SCA ResNet),它结合了多尺度通道和空间注意力机制以及残差结构,以提高模型的特征提取能力。本研究中提出的算法用于对HGG、LGG和健康组织进行分类,并与传统机器学习和神经网络进行比较。结果表明,M-SCA ResNet对所有三种组织类型的识别准确率均超过85%,且加权分数最高。此外,为了提高深度学习模型的可解释性,利用梯度加权类激活映射(Grad-CAM)来提取和可视化对分类有显著贡献的关键拉曼位移。大多数提取的拉曼位移对应于脑组织的特征峰,在先前的研究中已证明这些特征峰可有效区分不同分级的神经胶质瘤和正常组织。这一发现证明了M-SCA ResNet的特征提取能力与各种组织的生物分子特征之间存在很强的相关性。本研究进行的实验验证了使用M-SCA ResNet进行神经胶质瘤分级的可行性,并为制定后续的手术和治疗方案提供了有价值的支持,表明其在神经胶质瘤分级的光谱诊断中具有广阔的应用前景。

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