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4-氧代-β-内酰胺作为线粒体膜间蛋白酶PARL的共价抑制剂

4-Oxo-β-lactams as Covalent Inhibitors of the Mitochondrial Intramembrane Protease PARL.

作者信息

Ji Shanping, Bach Kathrin, Miriyala Vijay Madhav, Dohnálek Jan, Riopedre-Fernandez Miguel, Lepšík Martin, van de Plassche Merel, Vanhoutte Roeland, Barniol-Xicota Marta, Moreira Rui, Strisovsky Kvido, Verhelst Steven H L

机构信息

Laboratory of Chemical Biology, Department of Cellular and Molecular Medicine, KU Leuven - University of Leuven, Herestraat 49 box 901b, 3000 Leuven, Belgium.

Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Praha 6, 160 00 Praha, Czech Republic.

出版信息

ACS Med Chem Lett. 2024 Nov 14;15(12):2101-2106. doi: 10.1021/acsmedchemlett.4c00384. eCollection 2024 Dec 12.

DOI:10.1021/acsmedchemlett.4c00384
PMID:39691509
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11647676/
Abstract

Rhomboid proteases play a variety of physiological roles, but rhomboid protease inhibitors have been mostly developed for the model rhomboid GlpG. In this work, we screened different electrophilic scaffolds against the human mitochondrial rhomboid PARL and found 4-oxo-β-lactams as submicromolar inhibitors. Multifaceted computations suggest explanations for the activity at the molecular scale and provide models of covalently bound complexes. Together with the straightforward synthesis of the 4-oxo-β-lactam scaffold, this may pave the way toward selective, nonpeptidic PARL inhibitors.

摘要

类菱形蛋白酶发挥着多种生理作用,但类菱形蛋白酶抑制剂大多是针对典型的类菱形蛋白酶GlpG开发的。在这项研究中,我们针对人线粒体类菱形蛋白酶PARL筛选了不同的亲电支架,发现4-氧代-β-内酰胺是亚微摩尔级别的抑制剂。多方面的计算为分子水平的活性提供了解释,并提供了共价结合复合物的模型。结合4-氧代-β-内酰胺支架的简便合成方法,这可能为选择性、非肽类PARL抑制剂的开发铺平道路。

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本文引用的文献

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Extensive targeting of chemical space at the prime side of ketoamide inhibitors of rhomboid proteases by branched substituents empowers their selectivity and potency.通过支链取代基广泛靶向角蛋白酶抑制剂酮酰胺的主侧的化学空间,可增强其选择性和效力。
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4-Oxo-β-Lactams as Novel Inhibitors for Rhomboid Proteases.4-氧代-β-内酰胺作为新型的天冬氨酸蛋白酶抑制剂。
Chembiochem. 2023 Nov 2;24(21):e202300418. doi: 10.1002/cbic.202300418. Epub 2023 Sep 15.
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Mitochondrial defects caused by PARL deficiency lead to arrested spermatogenesis and ferroptosis.PARL 缺乏导致的线粒体缺陷会引起精子发生停滞和铁死亡。
Elife. 2023 Jul 28;12:e84710. doi: 10.7554/eLife.84710.
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Mitochondria regulate intracellular coenzyme Q transport and ferroptotic resistance via STARD7.线粒体通过 STARD7 调节细胞内辅酶 Q 转运和铁死亡抵抗。
Nat Cell Biol. 2023 Feb;25(2):246-257. doi: 10.1038/s41556-022-01071-y. Epub 2023 Jan 19.
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Chemical Blockage of the Mitochondrial Rhomboid Protease PARL by Novel Ketoamide Inhibitors Reveals Its Role in PINK1/Parkin-Dependent Mitophagy.新型酮酰胺抑制剂对线粒体菱形蛋白酶 PARL 的化学阻断揭示了其在 PINK1/Parkin 依赖性线粒体自噬中的作用。
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