Ji Shanping, Bach Kathrin, Miriyala Vijay Madhav, Dohnálek Jan, Riopedre-Fernandez Miguel, Lepšík Martin, van de Plassche Merel, Vanhoutte Roeland, Barniol-Xicota Marta, Moreira Rui, Strisovsky Kvido, Verhelst Steven H L
Laboratory of Chemical Biology, Department of Cellular and Molecular Medicine, KU Leuven - University of Leuven, Herestraat 49 box 901b, 3000 Leuven, Belgium.
Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Praha 6, 160 00 Praha, Czech Republic.
ACS Med Chem Lett. 2024 Nov 14;15(12):2101-2106. doi: 10.1021/acsmedchemlett.4c00384. eCollection 2024 Dec 12.
Rhomboid proteases play a variety of physiological roles, but rhomboid protease inhibitors have been mostly developed for the model rhomboid GlpG. In this work, we screened different electrophilic scaffolds against the human mitochondrial rhomboid PARL and found 4-oxo-β-lactams as submicromolar inhibitors. Multifaceted computations suggest explanations for the activity at the molecular scale and provide models of covalently bound complexes. Together with the straightforward synthesis of the 4-oxo-β-lactam scaffold, this may pave the way toward selective, nonpeptidic PARL inhibitors.
类菱形蛋白酶发挥着多种生理作用,但类菱形蛋白酶抑制剂大多是针对典型的类菱形蛋白酶GlpG开发的。在这项研究中,我们针对人线粒体类菱形蛋白酶PARL筛选了不同的亲电支架,发现4-氧代-β-内酰胺是亚微摩尔级别的抑制剂。多方面的计算为分子水平的活性提供了解释,并提供了共价结合复合物的模型。结合4-氧代-β-内酰胺支架的简便合成方法,这可能为选择性、非肽类PARL抑制剂的开发铺平道路。