Yılmaz Sümeyye Kırkıncı, Aşkar Şinasi, Poyraz Emine Berrin, Dege Necmi, Ağar Ayşen Alaman, Sıdden Chinnasami
Department of Chemistry, Faculty of Science, Ondokuz Mayıs University, TR-55270, Samsun, Turkey.
Department of Nutrient and Dietetics, Çankırı Karatekin University, TR-18200, Çankırı, Turkey.
J Mol Model. 2024 Dec 19;31(1):25. doi: 10.1007/s00894-024-06219-1.
Schiff bases, which have intriguing properties in many areas, have been studied extensively in recent years due to their structural properties and biological activities. In this research, a novel water-soluble Schiff base complex, Catena-((μ-(E)-2-((4-methoxy-2-oxidobenzylidene) ammonio) ethane-1-sulfonato potassium, CHKNOS (CMOAESP), was synthesized by a one-step condensation reaction of 2-hydroxy-4-methoxy benzaldehyde and taurine with the yield of 65%, 0.333 g. Spectral analysis of water-soluble crude product showed equilibria keto-enol tautomerism, by a resulting Zwitterionic form of the structure. The ADMET prediction showed that the CMOAESP obeys Lipinski's rule and was in bioavability range. The molecular docking results showed an inhibition ability for 1JIJ and MBT1 proteins which play an important role in antibacterial studies. The experimental end theoretical calculations were in a good agreement that CMOASP has inhibition efficiency against Escherichia coli and has inhibition at high concentrations against Staphylococcaceae aureus.
The WinGX software system SHELXS direct technique was used to solve the structure, and SHELXL full-matrix least-squares approach on F was used to refine the results. The Gaussian 09W program was used to carry out the DFT calculations. The gap values for CMOAESP were calculated by using the B3LYP/6- 311 + + G(d,p) method in order to predict its reactivities and behaviors in the gas phase. The frontier orbitals, LUMO and HOMO together with some global parameters as electronegativity (μ), chemical potential (χ), hardness (η), electrophilicity index (ω), and softness (S) values were predicted from DFT calculations.
席夫碱在许多领域具有引人关注的性质,近年来因其结构特性和生物活性而受到广泛研究。在本研究中,通过2-羟基-4-甲氧基苯甲醛与牛磺酸的一步缩合反应合成了一种新型水溶性席夫碱配合物,即链状-((μ-(E)-2-((4-甲氧基-2-氧化苄叉基)铵基)乙烷-1-磺酸钾,CHKNOS(CMOAESP),产率为65%,0.333克。水溶性粗产物的光谱分析表明存在平衡的酮-烯醇互变异构现象,其结构呈现两性离子形式。ADMET预测表明CMOAESP符合Lipinski规则且处于生物利用度范围内。分子对接结果显示对在抗菌研究中起重要作用的1JIJ和MBT1蛋白具有抑制能力。实验和理论计算结果高度一致,表明CMOASP对大肠杆菌具有抑制效率,对金黄色葡萄球菌在高浓度时具有抑制作用。
使用WinGX软件系统的SHELXS直接法解析结构,并使用SHELXL基于F的全矩阵最小二乘法对结果进行精修。使用高斯09W程序进行DFT计算。为了预测CMOAESP在气相中的反应性和行为,采用B3LYP/6-311++G(d,p)方法计算其能隙值。通过DFT计算预测前沿轨道、最低未占分子轨道(LUMO)和最高已占分子轨道(HOMO)以及一些全局参数,如电负性(μ)、化学势(χ)、硬度(η)、亲电指数(ω)和软度(S)值。