• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

对动力学模式进行采样的重要性:重新评估用于自由能景观模拟的机器学习势的不变和等变特征的基准。

The importance of sampling the dynamical modes: Reevaluating benchmarks for invariant and equivariant features of machine learning potentials for simulation of free energy landscapes.

作者信息

Perez-Lemus Gustavo, Xu Yinan, Jin Yezhi, Zubieta Rico Pablo, de Pablo Juan

机构信息

Pritzker School of Molecular Engineering, The University of Chicago, Chicago, Illinois 60637, USA.

Department of Chemical and Biological Engineering, Tandon School of Engineering, Courant Department of Computer Science, and Department of Physics, New York University, New York, New York 10012, USA.

出版信息

J Chem Phys. 2024 Dec 28;161(24). doi: 10.1063/5.0237399.

DOI:10.1063/5.0237399
PMID:39714008
Abstract

Machine learning interatomic potentials (MLIPs) are rapidly gaining interest for molecular modeling, as they provide a balance between quantum-mechanical level descriptions of atomic interactions and reasonable computational efficiency. However, questions remain regarding the stability of simulations using these potentials, as well as the extent to which the learned potential energy function can be extrapolated safely. Past studies have encountered challenges when MLIPs are applied to classical benchmark systems. In this work, we show that some of these challenges are related to the characteristics of the training datasets, particularly the inefficient exploration of the dynamical modes and the inclusion of rigid constraints. We demonstrate that long stability in simulations with MLIPs can be achieved by generating unconstrained datasets using unbiased classical simulations, provided that the important dynamical modes are correctly sampled. In addition, we emphasize that in order to achieve precise energy predictions, it is important to resort to enhanced sampling techniques for dataset generation, and we demonstrate that safe extrapolation of MLIPs depends on judicious choices related to the system's underlying free energy landscape and the symmetry features embedded within the machine learning models.

摘要

机器学习原子间势(MLIPs)在分子建模中迅速受到关注,因为它们在原子相互作用的量子力学水平描述和合理的计算效率之间取得了平衡。然而,关于使用这些势进行模拟的稳定性以及所学势能函数能够安全外推的程度,仍然存在问题。过去的研究在将MLIPs应用于经典基准系统时遇到了挑战。在这项工作中,我们表明其中一些挑战与训练数据集的特征有关,特别是对动力学模式的低效探索以及刚性约束的纳入。我们证明,通过使用无偏经典模拟生成无约束数据集,只要正确采样重要的动力学模式,就可以在使用MLIPs的模拟中实现长时间稳定性。此外,我们强调,为了实现精确的能量预测,采用增强采样技术生成数据集很重要,并且我们证明MLIPs的安全外推取决于与系统潜在自由能景观以及机器学习模型中嵌入的对称特征相关的明智选择。

相似文献

1
The importance of sampling the dynamical modes: Reevaluating benchmarks for invariant and equivariant features of machine learning potentials for simulation of free energy landscapes.对动力学模式进行采样的重要性:重新评估用于自由能景观模拟的机器学习势的不变和等变特征的基准。
J Chem Phys. 2024 Dec 28;161(24). doi: 10.1063/5.0237399.
2
ArcaNN: automated enhanced sampling generation of training sets for chemically reactive machine learning interatomic potentials.ArcaNN:用于化学反应性机器学习原子间势的训练集自动增强采样生成
Digit Discov. 2024 Oct 30;4(1):54-72. doi: 10.1039/d4dd00209a. eCollection 2025 Jan 15.
3
Transferable Water Potentials Using Equivariant Neural Networks.使用等变神经网络的可转移水势
J Phys Chem Lett. 2024 Apr 11;15(14):3740-3747. doi: 10.1021/acs.jpclett.4c00605. Epub 2024 Mar 28.
4
Constructing and Evaluating Machine-Learned Interatomic Potentials for Li-Based Disordered Rocksalts.构建并评估基于锂的无序岩盐的机器学习原子间势
J Chem Theory Comput. 2024 Jun 11;20(11):4844-4856. doi: 10.1021/acs.jctc.4c00039. Epub 2024 May 24.
5
Transferability and Accuracy of Ionic Liquid Simulations with Equivariant Machine Learning Interatomic Potentials.基于等变机器学习原子间势的离子液体模拟的可转移性和准确性
J Phys Chem Lett. 2024 Aug 1;15(30):7539-7547. doi: 10.1021/acs.jpclett.4c01942. Epub 2024 Jul 18.
6
Improving Molecular-Dynamics Simulations for Solid-Liquid Interfaces with Machine-Learning Interatomic Potentials.利用机器学习原子间势改进固液界面的分子动力学模拟
Chemistry. 2024 Sep 2;30(49):e202401373. doi: 10.1002/chem.202401373. Epub 2024 Aug 12.
7
Performance Assessment of Universal Machine Learning Interatomic Potentials: Challenges and Directions for Materials' Surfaces.通用机器学习原子间势的性能评估:材料表面的挑战与方向
ACS Appl Mater Interfaces. 2025 Mar 5;17(9):13111-13121. doi: 10.1021/acsami.4c03815. Epub 2024 Jul 11.
8
Atomistic modeling of the mechanical properties: the rise of machine learning interatomic potentials.原子级建模的力学性能:机器学习原子间势的兴起。
Mater Horiz. 2023 Jun 6;10(6):1956-1968. doi: 10.1039/d3mh00125c.
9
Machine Learning Interatomic Potentials for Heterogeneous Catalysis.用于多相催化的机器学习原子间势
Chemistry. 2024 Oct 28;30(60):e202401148. doi: 10.1002/chem.202401148. Epub 2024 Oct 16.
10
Development of Multimodal Machine Learning Potentials: Toward a Physics-Aware Artificial Intelligence.多模态机器学习潜力的发展:迈向具有物理意识的人工智能。
Acc Chem Res. 2021 Apr 6;54(7):1575-1585. doi: 10.1021/acs.accounts.0c00868. Epub 2021 Mar 13.

引用本文的文献

1
Free-Energy Landscapes and Surface Dynamics in Methane Activation on Ni(511) via Machine Learning and Enhanced Sampling.通过机器学习和增强采样研究Ni(511)表面甲烷活化过程中的自由能景观和表面动力学
ACS Catal. 2025 May 12;15(11):8931-8942. doi: 10.1021/acscatal.5c00724. eCollection 2025 Jun 6.