Li Xiaofang, Chen Hanle, Yan Jiachen, Liu Guohong, Li Chengjun, Zhou Xiaoxia, Wang Yan, Wu Yinbao, Yan Bing, Yan Xiliang
Institute of Environmental Research at Greater Bay Area, Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education, Guangzhou University, Guangzhou 510006, China.
School of Health, Guangzhou Vocational University of Science and Technology, Guangzhou 510555, China.
Environ Health (Wash). 2024 Jul 26;2(12):875-885. doi: 10.1021/envhealth.4c00088. eCollection 2024 Dec 20.
The rational design of molecules with the desired functionality presents a significant challenge in chemistry. Moreover, it is worth noting that making chemicals safe and sustainable is crucial to bringing them to the market. To address this, we propose a novel deep learning framework developed explicitly for inverse design of molecules with both functionality and biocompatibility. This innovative approach comprises two predictive models and one generative model, facilitating the targeted screening of novel molecules from created virtual chemical space. Our method's versatility is highlighted in the inverse design process, where it successfully generates molecules with specified motifs or composition, discovers synthetically accessible molecules, and jointly targets functional and safe properties beyond the training regime. The utility of this method is demonstrated in its ability to design ionic liquids (ILs) with enhanced antibacterial properties and reduced cytotoxicity, addressing the issue of balancing functionality and biocompatibility in molecular design.
合理设计具有所需功能的分子是化学领域的一项重大挑战。此外,值得注意的是,使化学品安全且可持续对于将它们推向市场至关重要。为解决这一问题,我们提出了一种专门为具有功能和生物相容性的分子逆向设计而开发的新型深度学习框架。这种创新方法包括两个预测模型和一个生成模型,有助于从创建的虚拟化学空间中对新型分子进行靶向筛选。我们方法的通用性在逆向设计过程中得到了突出体现,它成功生成了具有特定基序或组成的分子,发现了可合成获得的分子,并在训练范围之外共同针对功能和安全特性。该方法的实用性体现在其设计具有增强抗菌性能和降低细胞毒性的离子液体(ILs)的能力上,解决了分子设计中功能与生物相容性平衡的问题。