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基于密度泛函理论计算的局部原子间势贡献的机器学习能力研究

On machine learnability of local contributions to interatomic potentials from density functional theory calculations.

作者信息

Babaei Mahboobeh, Sadeghi Ali

机构信息

Department of Physics, Shahid Beheshti University, Tehran, 1983969411, Iran.

School of Nano Science, Institute for Research in Fundamental Sciences (IPM), P.O. Box 19395-5531, Tehran, Iran.

出版信息

Sci Rep. 2024 Dec 28;14(1):31395. doi: 10.1038/s41598-024-82990-8.

DOI:10.1038/s41598-024-82990-8
PMID:39733082
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11682297/
Abstract

Machine learning interatomic potentials, as a modern generation of classical force fields, take atomic environments as input and predict the corresponding atomic energies and forces. We challenge the commonly accepted assumption that the contribution of an atom can be learned from the short-range local environment of that atom. We employ density functional theory calculations to quantify the decay of the induced electron density and electrostatic potential in response to local perturbations throughout insulating, semiconducting and metallic samples of different dimensionalities. Molecules and thin layers are shown to fail keeping such disturbances localized. Therefore, the learnability of local atomic contributions, which guarantees scalability and transferability of a machine learning interatomic potential, is questionable in the case of molecules and low-dimensional samples. Similarly, the induced electrostatic effects due to substituted impurities or vacancy sites in a crystalline bulk are weakly damped and remain significant beyond several interatomic distances. However, geometric deformations in bulks are practically local within the first neighbors and induce a Yukawa-type electrostatic potential that exponentially vanishes. The practical importance of this finding is that it limits the application of the machine learning interatomic potentials to conformational search or thermal properties of bulk materials and so on, where only purely geometrical deformations are involved. Once chemically impactful defects like aliovalent impurities or vacancies are present, the interatomic potentials trained on local environments need to be corrected for long-range effects.

摘要

机器学习原子间势作为新一代经典力场,以原子环境为输入并预测相应的原子能量和力。我们对一个普遍接受的假设提出质疑,即原子的贡献可以从该原子的短程局部环境中学习到。我们采用密度泛函理论计算来量化在不同维度的绝缘、半导体和金属样本中,感应电子密度和静电势对局部微扰的衰减情况。结果表明,分子和薄层无法将此类干扰局限在局部范围内。因此,在分子和低维样本的情况下,保证机器学习原子间势的可扩展性和可转移性的局部原子贡献的可学习性是值得怀疑的。同样,晶体块体中由于替代杂质或空位产生的感应静电效应衰减较弱,在几个原子间距之外仍很显著。然而,块体中的几何变形在第一近邻范围内实际上是局部的,并会诱导出指数衰减的汤川型静电势。这一发现的实际重要性在于,它将机器学习原子间势的应用限制在构象搜索或块体材料的热性质等仅涉及纯粹几何变形的方面。一旦存在像异价杂质或空位这样具有化学影响的缺陷,基于局部环境训练的原子间势就需要针对长程效应进行修正。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e153/11682297/be94e52f902f/41598_2024_82990_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e153/11682297/51b8ef49d011/41598_2024_82990_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e153/11682297/5e904b5ed6ba/41598_2024_82990_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e153/11682297/efa5d08a3df8/41598_2024_82990_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e153/11682297/c6c0879ad922/41598_2024_82990_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e153/11682297/be94e52f902f/41598_2024_82990_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e153/11682297/51b8ef49d011/41598_2024_82990_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e153/11682297/5e904b5ed6ba/41598_2024_82990_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e153/11682297/efa5d08a3df8/41598_2024_82990_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e153/11682297/c6c0879ad922/41598_2024_82990_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e153/11682297/be94e52f902f/41598_2024_82990_Fig5_HTML.jpg

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2
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Nat Rev Chem. 2021 Jun;5(6):388-405. doi: 10.1038/s41570-021-00278-1. Epub 2021 May 20.
3
Extending machine learning beyond interatomic potentials for predicting molecular properties.将机器学习应用于超越原子间势的领域,以预测分子性质。
Nat Rev Chem. 2022 Sep;6(9):653-672. doi: 10.1038/s41570-022-00416-3. Epub 2022 Aug 25.
4
Self-consistent determination of long-range electrostatics in neural network potentials.神经网络势中长程静电的自洽确定。
Nat Commun. 2022 Mar 23;13(1):1572. doi: 10.1038/s41467-022-29243-2.
5
When do short-range atomistic machine-learning models fall short?短程原子级机器学习模型何时失效?
J Chem Phys. 2021 Jan 21;154(3):034111. doi: 10.1063/5.0031215.
6
A fourth-generation high-dimensional neural network potential with accurate electrostatics including non-local charge transfer.一种具有准确静电学(包括非局域电荷转移)的第四代高维神经网络势。
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7
Quantum chemical accuracy from density functional approximations via machine learning.通过机器学习实现密度泛函近似的量子化学精度。
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8
Quantum ESPRESSO toward the exascale.面向百亿亿次超级计算机的量子浓缩咖啡计划。
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9
Incorporating long-range physics in atomic-scale machine learning.将长程物理纳入原子尺度机器学习。
J Chem Phys. 2019 Nov 28;151(20):204105. doi: 10.1063/1.5128375.
10
Quantum machine learning for electronic structure calculations.量子机器学习在电子结构计算中的应用。
Nat Commun. 2018 Oct 10;9(1):4195. doi: 10.1038/s41467-018-06598-z.