• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

孟德尔随机化、表达数量性状基因座(eQTL)和单细胞转录组的综合分析确定CCN3为主动脉夹层的潜在生物标志物。

Integrated analyses of Mendelian randomization, eQTL, and single-cell transcriptome identify CCN3 as a potential biomarker in aortic dissection.

作者信息

Ran Haoyu, Li Changying, Rizvi Syed M Musa, Zhou Ruiqin, Kong Lingwen, Shuangling Sun, Shao Yue, Wu Kejia, Duan Changzhu, Luo Jun, Shi Haoming, Wu Qingchen, Zhang Cheng

机构信息

Department of Cardiothoracic Surgery, the First Affiliated Hospital of Chongqing Medical University, Chongqing, China.

Department of Cardiothoracic Surgery, Chongqing Emergency Medical Center, Chongqing University Central Hospital, Chongqing, China.

出版信息

Sci Rep. 2024 Dec 30;14(1):32062. doi: 10.1038/s41598-024-83611-0.

DOI:10.1038/s41598-024-83611-0
PMID:39738466
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11685893/
Abstract

Plasma secretory proteins are associated with various diseases, including aortic dissection (AD). However, current research on the correlation between AD and plasma protein levels is scarce or lacks specificity. This study aimed to explore plasma secretory proteins as potential biomarkers for AD. Through genome-wide association studies, expression quantitative trait locus (eQTL) analysis, and human plasma protein profiling, we identified DBNL, NPC2, SUMF2, and TFPI as high-risk genes and CCN3, PRKCSH, TEX264, and TGFBR3 as low-risk genes for AD. Further cell localization and differential expression analysis of these eight genes were conducted using single-cell data. We also examined their expression in three Gene Expression Omnibus datasets, measured their mRNA levels in AD versus normal tissues using qPCR, and assessed their protein levels in patients' blood versus healthy individuals using enzyme-linked immunosorbent assay. Our findings suggest that CCN3, consistently downregulated in both mRNA and plasma levels during AD, may have a protective role. Initial enrichment analyses of differentially expressed CCN3 cells suggested their involvement in focal adhesion, actin cytoskeleton regulation, and the PI3K-Akt signaling pathway.

摘要

血浆分泌蛋白与包括主动脉夹层(AD)在内的多种疾病相关。然而,目前关于AD与血浆蛋白水平之间相关性的研究较少或缺乏特异性。本研究旨在探索血浆分泌蛋白作为AD潜在生物标志物的可能性。通过全基因组关联研究、表达定量性状位点(eQTL)分析和人类血浆蛋白谱分析,我们确定DBNL、NPC2、SUMF2和TFPI为AD的高风险基因,CCN3、PRKCSH、TEX264和TGFBR3为低风险基因。利用单细胞数据对这八个基因进行了进一步的细胞定位和差异表达分析。我们还在三个基因表达综合数据库中检测了它们的表达情况,使用qPCR测量了它们在AD组织与正常组织中的mRNA水平,并使用酶联免疫吸附测定法评估了它们在患者血液与健康个体中的蛋白水平。我们的研究结果表明,CCN3在AD期间mRNA和血浆水平均持续下调,可能具有保护作用。对差异表达的CCN3细胞进行的初步富集分析表明,它们参与了粘着斑、肌动蛋白细胞骨架调节和PI3K-Akt信号通路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9da/11685893/b6a21ecd2a59/41598_2024_83611_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9da/11685893/8337092d45d0/41598_2024_83611_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9da/11685893/bfcf065c7fdc/41598_2024_83611_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9da/11685893/49997c8134b0/41598_2024_83611_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9da/11685893/62cd7d4f8498/41598_2024_83611_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9da/11685893/4c820862ff2b/41598_2024_83611_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9da/11685893/1983c2dd38a2/41598_2024_83611_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9da/11685893/0e096b4eb21f/41598_2024_83611_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9da/11685893/b6a21ecd2a59/41598_2024_83611_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9da/11685893/8337092d45d0/41598_2024_83611_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9da/11685893/bfcf065c7fdc/41598_2024_83611_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9da/11685893/49997c8134b0/41598_2024_83611_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9da/11685893/62cd7d4f8498/41598_2024_83611_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9da/11685893/4c820862ff2b/41598_2024_83611_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9da/11685893/1983c2dd38a2/41598_2024_83611_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9da/11685893/0e096b4eb21f/41598_2024_83611_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9da/11685893/b6a21ecd2a59/41598_2024_83611_Fig8_HTML.jpg

相似文献

1
Integrated analyses of Mendelian randomization, eQTL, and single-cell transcriptome identify CCN3 as a potential biomarker in aortic dissection.孟德尔随机化、表达数量性状基因座(eQTL)和单细胞转录组的综合分析确定CCN3为主动脉夹层的潜在生物标志物。
Sci Rep. 2024 Dec 30;14(1):32062. doi: 10.1038/s41598-024-83611-0.
2
CCN3/NOV as a potential therapeutic target for diverticular disease: A proteome-wide Mendelian randomization study.CCN3/NOV 作为憩室病的潜在治疗靶点:一项全蛋白质组 Mendelian 随机研究。
Medicine (Baltimore). 2024 Nov 8;103(45):e40467. doi: 10.1097/MD.0000000000040467.
3
Integrative analysis of transcriptome-wide association study and mRNA expression profile identified candidate genes and pathways associated with aortic aneurysm and dissection.全转录组关联研究与mRNA表达谱的综合分析确定了与主动脉瘤和主动脉夹层相关的候选基因和通路。
Gene. 2022 Jan 15;808:145993. doi: 10.1016/j.gene.2021.145993. Epub 2021 Oct 6.
4
Identification of Alzheimer's disease susceptibility genes by integrating eight human brain single-cell transcriptomes with genome-wide association studies.通过整合八个人类大脑单细胞转录组与全基因组关联研究来鉴定阿尔茨海默病易感基因。
J Neurochem. 2025 Jan;169(1):e16276. doi: 10.1111/jnc.16276.
5
Integrated analyses of single-cell transcriptome and Mendelian randomization reveal the protective role of FCRL3 in multiple sclerosis.单细胞转录组和孟德尔随机化的综合分析揭示了 FCRL3 在多发性硬化中的保护作用。
Front Immunol. 2024 Jul 15;15:1428962. doi: 10.3389/fimmu.2024.1428962. eCollection 2024.
6
Integrative eQTL and Mendelian randomization analysis reveals key genetic markers in mesothelioma.整合性表达数量性状基因座(eQTL)与孟德尔随机化分析揭示了间皮瘤中的关键遗传标记。
Respir Res. 2025 Apr 13;26(1):140. doi: 10.1186/s12931-025-03219-4.
7
A new perspective on endometriosis: Integrating eQTL mendelian randomization with transcriptomics and single-cell data analyses.子宫内膜异位症的新视角:将表达数量性状基因座孟德尔随机化与转录组学和单细胞数据分析相结合。
Funct Integr Genomics. 2025 Mar 26;25(1):75. doi: 10.1007/s10142-025-01543-y.
8
Investigating potential biomarkers of acute pancreatitis in patients with a BMI>30 using Mendelian randomization and transcriptomic analysis.利用孟德尔随机化和转录组分析探讨 BMI>30 的急性胰腺炎患者的潜在生物标志物。
Lipids Health Dis. 2024 Apr 22;23(1):119. doi: 10.1186/s12944-024-02102-3.
9
Bayesian genome-wide TWAS with reference transcriptomic data of brain and blood tissues identified 141 risk genes for Alzheimer's disease dementia.基于大脑和血液组织参考转录组数据的贝叶斯全基因组 TWAS 鉴定出 141 个阿尔茨海默病痴呆风险基因。
Alzheimers Res Ther. 2024 Jun 1;16(1):120. doi: 10.1186/s13195-024-01488-7.
10
Mendelian randomization analysis of blood uric acid and risk of preeclampsia: based on GWAS and eQTL data.血尿酸与子痫前期风险的孟德尔随机化分析:基于全基因组关联研究(GWAS)和表达定量性状基因座(eQTL)数据
J Matern Fetal Neonatal Med. 2025 Dec;38(1):2443673. doi: 10.1080/14767058.2024.2443673. Epub 2025 Jan 2.

本文引用的文献

1
Evaluation of Myocilin Variant Protein Structures Modeled by AlphaFold2.由AlphaFold2建模的肌纤蛋白变体蛋白质结构评估。
Biomolecules. 2023 Dec 21;14(1):14. doi: 10.3390/biom14010014.
2
Expression of secreted frizzled-related proteins in acute aortic dissection patients and the effects on prognosis.急性主动脉夹层患者中分泌型卷曲相关蛋白的表达及其对预后的影响。
Front Cardiovasc Med. 2023 Dec 22;10:1139122. doi: 10.3389/fcvm.2023.1139122. eCollection 2023.
3
CCN3/NOV serum levels in coronary artery disease (CAD) patients and its correlation with TNF-α and IL-6.
冠心病患者血清中 CCN3/NOV 水平及其与 TNF-α 和 IL-6 的相关性。
BMC Res Notes. 2023 Nov 2;16(1):306. doi: 10.1186/s13104-023-06590-x.
4
Three-Dimensional Bioprinting of Ovine Aortic Valve Endothelial and Interstitial Cells for the Development of Multicellular Tissue Engineered Tissue Constructs.用于多细胞组织工程组织构建体开发的绵羊主动脉瓣内皮细胞和间质细胞的三维生物打印
Bioengineering (Basel). 2023 Jun 30;10(7):787. doi: 10.3390/bioengineering10070787.
5
Genome-wide association study of thoracic aortic aneurysm and dissection in the Million Veteran Program.在百万退伍军人计划中进行全基因组关联研究,探讨胸主动脉瘤和夹层。
Nat Genet. 2023 Jul;55(7):1106-1115. doi: 10.1038/s41588-023-01420-z. Epub 2023 Jun 12.
6
Circulating levels of cytokines and risk of cardiovascular disease: a Mendelian randomization study.循环细胞因子水平与心血管疾病风险:一项孟德尔随机化研究。
Front Immunol. 2023 May 25;14:1175421. doi: 10.3389/fimmu.2023.1175421. eCollection 2023.
7
Single-Cell RNA-Seq Analysis Reveals Macrophages Are Involved in the Pathogenesis of Human Sporadic Acute Type A Aortic Dissection.单细胞 RNA 测序分析揭示巨噬细胞参与了人类散发性急性 A 型主动脉夹层的发病机制。
Biomolecules. 2023 Feb 20;13(2):399. doi: 10.3390/biom13020399.
8
Endothelial dysfunction in Marfan syndrome mice is restored by resveratrol.马凡综合征小鼠的内皮功能障碍可被白藜芦醇所恢复。
Sci Rep. 2022 Dec 28;12(1):22504. doi: 10.1038/s41598-022-26662-5.
9
KEGG for taxonomy-based analysis of pathways and genomes.KEGG 用于基于分类的途径和基因组分析。
Nucleic Acids Res. 2023 Jan 6;51(D1):D587-D592. doi: 10.1093/nar/gkac963.
10
Low expression of ESR1 correlates with ascending aortic dilation and acute type A aortic dissection.ESR1 低表达与升主动脉扩张和急性 A 型主动脉夹层相关。
Gene. 2023 Jan 30;851:147001. doi: 10.1016/j.gene.2022.147001. Epub 2022 Oct 22.