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健康核心:协调脑部磁共振成像以支持多中心偏头痛分类研究。

Healthy core: Harmonizing brain MRI for supporting multicenter migraine classification studies.

作者信息

Yoon Hyunsoo, Schwedt Todd J, Chong Catherine D, Olatunde Oyekanmi, Wu Teresa

机构信息

Department of Industrial Engineering, Yonsei University, Seoul, Republic of Korea.

Department of Neurology, Mayo Clinic, Scottsdale, Arizona, United States of America.

出版信息

PLoS One. 2024 Dec 31;19(12):e0288300. doi: 10.1371/journal.pone.0288300. eCollection 2024.

DOI:10.1371/journal.pone.0288300
PMID:39739610
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11687649/
Abstract

Multicenter and multi-scanner imaging studies may be necessary to ensure sufficiently large sample sizes for developing accurate predictive models. However, multicenter studies, incorporating varying research participant characteristics, MRI scanners, and imaging acquisition protocols, may introduce confounding factors, potentially hindering the creation of generalizable machine learning models. Models developed using one dataset may not readily apply to another, emphasizing the importance of classification model generalizability in multi-scanner and multicenter studies for producing reproducible results. This study focuses on enhancing generalizability in classifying individual migraine patients and healthy controls using brain MRI data through a data harmonization strategy. We propose identifying a 'healthy core'-a group of homogeneous healthy controls with similar characteristics-from multicenter studies. The Maximum Mean Discrepancy (MMD) in Geodesic Flow Kernel (GFK) space is employed to compare two datasets, capturing data variabilities and facilitating the identification of this 'healthy core'. Homogeneous healthy controls play a vital role in mitigating unwanted heterogeneity, enabling the development of highly accurate classification models with improved performance on new datasets. Extensive experimental results underscore the benefits of leveraging a 'healthy core'. We utilized two datasets: one comprising 120 individuals (66 with migraine and 54 healthy controls), and another comprising 76 individuals (34 with migraine and 42 healthy controls). Notably, a homogeneous dataset derived from a cohort of healthy controls yielded a significant 25% accuracy improvement for both episodic and chronic migraineurs.

摘要

多中心和多扫描仪成像研究可能是必要的,以确保有足够大的样本量来开发准确的预测模型。然而,纳入不同研究参与者特征、MRI扫描仪和成像采集协议的多中心研究可能会引入混杂因素,潜在地阻碍可推广机器学习模型的创建。使用一个数据集开发的模型可能无法轻易应用于另一个数据集,这凸显了分类模型可推广性在多扫描仪和多中心研究中对于产生可重复结果的重要性。本研究聚焦于通过数据协调策略,利用脑MRI数据提高对个体偏头痛患者和健康对照进行分类时的可推广性。我们建议从多中心研究中识别出一个“健康核心”——一组具有相似特征的同质健康对照。利用测地线流核(GFK)空间中的最大均值差异(MMD)来比较两个数据集,捕捉数据变异性并便于识别这个“健康核心”。同质健康对照在减轻不必要的异质性方面起着至关重要的作用,能够开发出在新数据集上具有更高性能的高精度分类模型。大量实验结果强调了利用“健康核心”的益处。我们使用了两个数据集:一个包含120名个体(66名偏头痛患者和54名健康对照),另一个包含76名个体(34名偏头痛患者和42名健康对照)。值得注意的是,从一组健康对照中得出的同质数据集,对于发作性和慢性偏头痛患者,准确率显著提高了25%。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8732/11687649/a8048926187d/pone.0288300.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8732/11687649/03b4ab98b51b/pone.0288300.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8732/11687649/38b712b01277/pone.0288300.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8732/11687649/a6f3443df568/pone.0288300.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8732/11687649/a8048926187d/pone.0288300.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8732/11687649/03b4ab98b51b/pone.0288300.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8732/11687649/38b712b01277/pone.0288300.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8732/11687649/a6f3443df568/pone.0288300.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8732/11687649/a8048926187d/pone.0288300.g004.jpg

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本文引用的文献

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DeepComBat: A statistically motivated, hyperparameter-robust, deep learning approach to harmonization of neuroimaging data.DeepComBat:一种基于统计学的、超参数稳健的、深度学习方法,用于神经影像学数据的调和。
Hum Brain Mapp. 2024 Aug 1;45(11):e26708. doi: 10.1002/hbm.26708.
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Characterization of the effects of outliers on ComBat harmonization for removing inter-site data heterogeneity in multisite neuroimaging studies.在多中心神经影像学研究中,离群值对用于消除多中心数据异质性的ComBat标准化效果的特征分析。
Front Neurosci. 2023 May 25;17:1146175. doi: 10.3389/fnins.2023.1146175. eCollection 2023.
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Deep Constrained Spherical Deconvolution for Robust Harmonization.
用于稳健协调的深度约束球面反卷积
Proc SPIE Int Soc Opt Eng. 2023 Feb;12464. doi: 10.1117/12.2654398. Epub 2023 Apr 3.
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Mitigating site effects in covariance for machine learning in neuroimaging data.减轻神经影像学数据中机器学习协方差中的站点效应。
Hum Brain Mapp. 2022 Mar;43(4):1179-1195. doi: 10.1002/hbm.25688. Epub 2021 Dec 14.
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Structural and Functional Brain Changes in Migraine.偏头痛患者大脑的结构和功能变化
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J Headache Pain. 2020 Sep 14;21(1):111. doi: 10.1186/s10194-020-01176-5.
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The Link Between Structural and Functional Brain Abnormalities in Depression: A Systematic Review of Multimodal Neuroimaging Studies.抑郁症中大脑结构与功能异常之间的联系:多模态神经影像学研究的系统综述
Front Psychiatry. 2020 Jun 3;11:485. doi: 10.3389/fpsyt.2020.00485. eCollection 2020.
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