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单细胞空间蛋白质组学

Single-cell spatial proteomics.

作者信息

Liyanage Senal, Guo Jia

机构信息

Biodesign Institute and School of Molecular Sciences, Arizona State University, Tempe, Arizona, USA.

出版信息

Histol Histopathol. 2025 Aug;40(8):1173-1184. doi: 10.14670/HH-18-861. Epub 2024 Dec 13.

DOI:10.14670/HH-18-861
PMID:39744823
Abstract

Recent advancements in single-cell spatial proteomics have revolutionized our ability to elucidate cellular signaling networks and their implications in health and disease. This review examines these cutting-edge technologies, focusing on mass spectrometry (MS) imaging and multiplexed immunofluorescence (mIF). Such approaches allow high-resolution protein profiling at the single-cell level, revealing intricate cellular heterogeneity, spatial organization, and protein functions within their native cellular contexts. MS imaging techniques offer unprecedented high-dimensional resolution and provide detailed insights into their subcellular protein localization and abundance. mIF enables rapid and high-throughput protein profiling, enhancing its accessibility for diverse research and clinical applications. This review assesses the current challenges associated with these methodologies and also discusses the potential solutions to overcome these obstacles. The integration of spatial proteomics with other systems biology approaches holds great promise for enhancing our understanding of complex biological systems. It could also lead to significant advancements in molecular diagnostics and personalized treatment strategies.

摘要

单细胞空间蛋白质组学的最新进展彻底改变了我们阐明细胞信号网络及其在健康和疾病中的意义的能力。本综述探讨了这些前沿技术,重点关注质谱(MS)成像和多重免疫荧光(mIF)。此类方法允许在单细胞水平进行高分辨率蛋白质分析,揭示其天然细胞环境中复杂的细胞异质性、空间组织和蛋白质功能。MS成像技术提供了前所未有的高维分辨率,并对亚细胞蛋白质定位和丰度提供了详细的见解。mIF能够实现快速且高通量的蛋白质分析,提高了其在各种研究和临床应用中的可及性。本综述评估了与这些方法相关的当前挑战,并讨论了克服这些障碍的潜在解决方案。空间蛋白质组学与其他系统生物学方法的整合有望加深我们对复杂生物系统的理解。它还可能在分子诊断和个性化治疗策略方面带来重大进展。

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本文引用的文献

1
Spatially resolved subcellular protein-protein interactomics in drug-perturbed lung-cancer cultures and tissues.药物扰动的肺癌培养物和组织中的空间分辨亚细胞蛋白质-蛋白质相互作用组学
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Ultrasensitive and Multiplexed Protein Imaging with Clickable and Cleavable Fluorophores.通过点击反应和可裂解荧光染料实现超高灵敏和多重化的蛋白质成像。
Anal Chem. 2024 May 7;96(18):7281-7288. doi: 10.1021/acs.analchem.4c01273. Epub 2024 Apr 25.
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Multi-OMICS approaches in cancer biology: New era in cancer therapy.
多组学方法在癌症生物学中的应用:癌症治疗的新纪元。
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Fully automated sequential immunofluorescence (seqIF) for hyperplex spatial proteomics.全自动序贯免疫荧光(seqIF)用于超多重空间蛋白质组学。
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Multiplex Protein Imaging through PACIFIC: Photoactive Immunofluorescence with Iterative Cleavage.通过PACIFIC进行多重蛋白质成像:具有迭代切割功能的光活性免疫荧光
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Multiplexed Single-Cell in Situ Protein Profiling.多重单细胞原位蛋白质分析
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Cell. 2022 Jan 20;185(2):299-310.e18. doi: 10.1016/j.cell.2021.12.023.