• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于粉末X射线衍射的端到端晶体结构预测

End-to-End Crystal Structure Prediction from Powder X-Ray Diffraction.

作者信息

Lai Qingsi, Xu Fanjie, Yao Lin, Gao Zhifeng, Liu Siyuan, Wang Hongshuai, Lu Shuqi, He Di, Wang Liwei, Zhang Linfeng, Wang Cheng, Ke Guolin

机构信息

DP Technology, Beijing, 100080, China.

Center for Data Science, Peking University, Beijing, 100871, China.

出版信息

Adv Sci (Weinh). 2025 Feb;12(8):e2410722. doi: 10.1002/advs.202410722. Epub 2025 Jan 4.

DOI:10.1002/advs.202410722
PMID:39755935
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11848617/
Abstract

Powder X-ray diffraction (PXRD) is a prevalent technique in materials characterization. While the analysis of PXRD often requires extensive human manual intervention, and most automated method only achieved at coarse-grained level. The more difficult and important task of fine-grained crystal structure prediction from PXRD remains unaddressed. This study introduces XtalNet, the first equivariant deep generative model for end-to-end crystal structure prediction from PXRD. Unlike previous crystal structure prediction methods that rely solely on composition, XtalNet leverages PXRD as an additional condition, eliminating ambiguity and enabling the generation of complex organic structures with up to 400 atoms in the unit cell. XtalNet comprises two modules: a Contrastive PXRD-Crystal Pretraining (CPCP) module that aligns PXRD space with crystal structure space, and a Conditional Crystal Structure Generation (CCSG) module that generates candidate crystal structures conditioned on PXRD patterns. Evaluation on two MOF datasets (hMOF-100 and hMOF-400) demonstrates XtalNet's effectiveness. XtalNet achieves a top-10 Match Rate of 90.2% and 79% for hMOF-100 and hMOF-400 in conditional crystal structure prediction task, respectively. XtalNet enables the direct prediction of crystal structures from experimental measurements, eliminating the need for manual intervention and external databases. This opens up new possibilities for automated crystal structure determination and the accelerated discovery of novel materials.

摘要

粉末X射线衍射(PXRD)是材料表征中一种普遍使用的技术。虽然对PXRD的分析通常需要大量人工干预,且大多数自动化方法仅在粗粒度水平上实现。但从PXRD进行细粒度晶体结构预测这一更困难且重要的任务仍未得到解决。本研究引入了XtalNet,这是首个用于从PXRD进行端到端晶体结构预测的等变深度生成模型。与以往仅依赖成分的晶体结构预测方法不同,XtalNet将PXRD作为附加条件,消除了模糊性,并能够生成单胞中原子数多达400个的复杂有机结构。XtalNet由两个模块组成:一个对比PXRD - 晶体预训练(CPCP)模块,用于使PXRD空间与晶体结构空间对齐;以及一个条件晶体结构生成(CCSG)模块,用于根据PXRD模式生成候选晶体结构。在两个金属有机框架数据集(hMOF - 100和hMOF - 400)上的评估证明了XtalNet的有效性。在条件晶体结构预测任务中,XtalNet对hMOF - 100和hMOF - 400的前10匹配率分别达到了90.2%和79%。XtalNet能够从实验测量直接预测晶体结构,无需人工干预和外部数据库。这为自动化晶体结构测定以及加速新型材料的发现开辟了新的可能性。

相似文献

1
End-to-End Crystal Structure Prediction from Powder X-Ray Diffraction.基于粉末X射线衍射的端到端晶体结构预测
Adv Sci (Weinh). 2025 Feb;12(8):e2410722. doi: 10.1002/advs.202410722. Epub 2025 Jan 4.
2
Crystal Structure Determination from Powder Diffraction Patterns with Generative Machine Learning.利用生成式机器学习从粉末衍射图谱确定晶体结构
J Am Chem Soc. 2024 Nov 6;146(44):30340-30348. doi: 10.1021/jacs.4c10244. Epub 2024 Sep 19.
3
Structure prediction as a tool for solution of the crystal structures of metallo-organic complexes using powder X-ray diffraction data.将结构预测作为利用粉末X射线衍射数据解析金属有机配合物晶体结构的一种工具。
Acta Crystallogr B. 2002 Apr;58(Pt 2):233-43. doi: 10.1107/s0108768101019565. Epub 2002 Mar 25.
4
Application of X-ray Diffraction and Electron Crystallography for Solving Complex Structure Problems.X 射线衍射和电子晶体学在解决复杂结构问题中的应用。
Acc Chem Res. 2017 Nov 21;50(11):2737-2745. doi: 10.1021/acs.accounts.7b00366. Epub 2017 Nov 1.
5
Three-dimensional electron diffraction as a complementary technique to powder X-ray diffraction for phase identification and structure solution of powders.三维电子衍射作为粉末 X 射线衍射的补充技术,用于粉末的物相鉴定和结构解析。
IUCrJ. 2015 Feb 10;2(Pt 2):267-82. doi: 10.1107/S2052252514028188. eCollection 2015 Mar 1.
6
Automated prediction of lattice parameters from X-ray powder diffraction patterns.从X射线粉末衍射图谱自动预测晶格参数。
J Appl Crystallogr. 2021 Nov 30;54(Pt 6):1799-1810. doi: 10.1107/S1600576721010840. eCollection 2021 Dec 1.
7
Single-Crystal Structural Analysis of 2D Metal-Organic Frameworks and Covalent Organic Frameworks by Three-Dimensional Electron Diffraction.二维金属有机框架和共价有机框架的三维电子衍射单晶结构分析
Acc Chem Res. 2024 Sep 3;57(17):2522-2531. doi: 10.1021/acs.accounts.4c00335. Epub 2024 Aug 15.
8
Reassessment of paracetamol orthorhombic Form III and determination of a novel low-temperature monoclinic Form III-m from powder diffraction data.对扑热息痛正交晶型III的重新评估以及从粉末衍射数据确定一种新型低温单斜晶型III-m
Acta Crystallogr C Struct Chem. 2018 Mar 1;74(Pt 3):392-399. doi: 10.1107/S2053229618002619. Epub 2018 Feb 28.
9
Discovery and In Situ Crystallization Studies of Cerium-Based Metal-Organic Frameworks with V-Shaped Linker Molecules.具有V形连接分子的铈基金属有机框架的发现与原位结晶研究
Inorg Chem. 2023 Dec 25;62(51):20929-20939. doi: 10.1021/acs.inorgchem.3c01862. Epub 2023 Dec 4.
10
Simulating Powder X-ray Diffraction Patterns of Two-Dimensional Materials.模拟二维材料的粉末X射线衍射图谱。
Inorg Chem. 2018 Dec 17;57(24):15123-15132. doi: 10.1021/acs.inorgchem.8b02315. Epub 2018 Nov 28.

引用本文的文献

1
Structural characteristics of Brassica rapa L. Polysaccharide and its bioactivity on alcoholic liver injury.芜菁多糖的结构特征及其对酒精性肝损伤的生物活性
Ultrason Sonochem. 2025 Sep;120:107505. doi: 10.1016/j.ultsonch.2025.107505. Epub 2025 Aug 11.
2
Powder diffraction crystal structure determination using generative models.使用生成模型进行粉末衍射晶体结构测定。
Nat Commun. 2025 Aug 11;16(1):7428. doi: 10.1038/s41467-025-62708-8.
3
Global Research Trends in Biomimetic Lattice Structures for Energy Absorption and Deformation: A Bibliometric Analysis (2020-2025).

本文引用的文献

1
A comprehensive transformer-based approach for high-accuracy gas adsorption predictions in metal-organic frameworks.一种基于变压器的综合方法,用于高精度预测金属有机框架中的气体吸附。
Nat Commun. 2024 Mar 1;15(1):1904. doi: 10.1038/s41467-024-46276-x.
2
Crystallography companion agent for high-throughput materials discovery.用于高通量材料发现的晶体学辅助剂。
Nat Comput Sci. 2021 Apr;1(4):290-297. doi: 10.1038/s43588-021-00059-2. Epub 2021 Apr 19.
3
Metal-organic frameworks and covalent organic frameworks as disruptive membrane materials for energy-efficient gas separation.
用于能量吸收和变形的仿生晶格结构的全球研究趋势:文献计量分析(2020 - 2025)
Biomimetics (Basel). 2025 Jul 19;10(7):477. doi: 10.3390/biomimetics10070477.
4
A new benchmark for machine learning applied to powder X-ray diffraction.应用于粉末X射线衍射的机器学习新基准。
Sci Data. 2025 Jul 10;12(1):1186. doi: 10.1038/s41597-025-05534-3.
金属有机框架材料和共价有机框架材料作为用于高效节能气体分离的突破性膜材料。
Nat Nanotechnol. 2022 Sep;17(9):911-923. doi: 10.1038/s41565-022-01168-3. Epub 2022 Aug 22.
4
Crystal structure prediction by combining graph network and optimization algorithm.结合图网络与优化算法进行晶体结构预测。
Nat Commun. 2022 Mar 21;13(1):1492. doi: 10.1038/s41467-022-29241-4.
5
Data-efficient machine learning for molecular crystal structure prediction.用于分子晶体结构预测的数据高效机器学习。
Chem Sci. 2021 Feb 11;12(12):4536-4546. doi: 10.1039/d0sc05765g.
6
Symmetry prediction and knowledge discovery from X-ray diffraction patterns using an interpretable machine learning approach.基于可解释机器学习方法的 X 射线衍射图谱的对称性预测与知识发现。
Sci Rep. 2020 Dec 11;10(1):21790. doi: 10.1038/s41598-020-77474-4.
7
3-D Inorganic Crystal Structure Generation and Property Prediction via Representation Learning.通过表示学习生成和预测 3-D 无机晶体结构。
J Chem Inf Model. 2020 Oct 26;60(10):4518-4535. doi: 10.1021/acs.jcim.0c00464. Epub 2020 Sep 16.
8
: from visualization to analysis, design and prediction.从可视化到分析、设计与预测。
J Appl Crystallogr. 2020 Feb 1;53(Pt 1):226-235. doi: 10.1107/S1600576719014092.
9
Recent developments in the Inorganic Crystal Structure Database: theoretical crystal structure data and related features.无机晶体结构数据库的最新进展:理论晶体结构数据及相关特征
J Appl Crystallogr. 2019 Sep 23;52(Pt 5):918-925. doi: 10.1107/S160057671900997X. eCollection 2019 Oct 1.
10
Tutorial on Powder X-ray Diffraction for Characterizing Nanoscale Materials.用于表征纳米级材料的粉末X射线衍射教程。
ACS Nano. 2019 Jul 23;13(7):7359-7365. doi: 10.1021/acsnano.9b05157.