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通过机器学习确定的治疗靶点TPD52塑造乳腺癌免疫微环境。

TPD52 as a Therapeutic Target Identified by Machine Learning Shapes the Immune Microenvironment in Breast Cancer.

作者信息

Xia Jie, Zhou Xudong

机构信息

Department of Respiratory and Critical Care Medicine, National Clinical Research Center of Respiratory Disease, Key Laboratory of Pulmonary Diseases of Health Ministry, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.

Department of Thyroid and Breast Surgery, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.

出版信息

J Cell Mol Med. 2025 Jan;29(1):e70333. doi: 10.1111/jcmm.70333.

Abstract

Breast cancer (BRCA) is one of the most common malignancies and a leading cause of cancer-related mortality among women globally. Despite advances in diagnosis and treatment, the heterogeneity of BRCA presents significant challenges for effective management and prognosis. Recent studies emphasise the critical role of the tumour microenvironment, particularly immune cells, in influencing tumour behaviour and patient outcomes. This study uses machine learning-based methodologies to investigate the role of tumour protein D52 (TPD52) as a pivotal immune regulator in BRCA. We employed single-cell RNA sequencing (scRNA-seq) to characterise the immune landscape of breast tumours and identify differentially expressed genes (DEGs) associated with TPD52. Our findings indicate that TPD52 may modulate immune cell infiltration and the tumour immune landscape, impacting tumour aggression and patient survival. Furthermore, we performed in vitro validation to elucidate the functional implications of TPD52. By integrating computational analysis with experimental validation, this research highlights TPD52's potential as a biomarker for therapeutic intervention and provides insights into its role in immune regulation within the BRCA microenvironment.

摘要

乳腺癌(BRCA)是最常见的恶性肿瘤之一,也是全球女性癌症相关死亡的主要原因。尽管在诊断和治疗方面取得了进展,但BRCA的异质性给有效管理和预后带来了重大挑战。最近的研究强调了肿瘤微环境,特别是免疫细胞,在影响肿瘤行为和患者预后方面的关键作用。本研究使用基于机器学习的方法来研究肿瘤蛋白D52(TPD52)作为BRCA中关键免疫调节因子的作用。我们采用单细胞RNA测序(scRNA-seq)来表征乳腺肿瘤的免疫格局,并鉴定与TPD52相关的差异表达基因(DEG)。我们的研究结果表明,TPD52可能调节免疫细胞浸润和肿瘤免疫格局,影响肿瘤侵袭和患者生存。此外,我们进行了体外验证以阐明TPD52的功能意义。通过将计算分析与实验验证相结合,本研究突出了TPD52作为治疗干预生物标志物的潜力,并提供了对其在BRCA微环境中免疫调节作用的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9af3/11702390/ccf1a74f8180/JCMM-29-e70333-g001.jpg

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