Koposova Olga N, Kazantseva Olesya A, Shadrin Andrey M
Laboratory of Bacteriophage Biology, G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences, Federal Research Center, Prospect Nauki, 5, 142290 Pushchino, Russia.
Biomolecules. 2024 Dec 11;14(12):1586. doi: 10.3390/biom14121586.
The increasing number of antibiotic-resistant bacterial pathogens is a serious problem in medicine. Endolysins are bacteriolytic enzymes of bacteriophages, and a promising group of enzymes with antibacterial properties. Endolysins of bacteriophages infecting Gram-positive bacteria have a modular domain organization. This feature can be used to design enzymes with new or improved properties by modifying or shuffling individual domains. This work is a detailed analysis 1of the diversity of endolysin domains found in bacteriophages infecting bacilli. During the course of the work, a database of endolysins of such bacteriophages was created, and their domain structures were analyzed using the NCBI database, RASTtk, BLASTp, HHpred, and InterPro programs. A phylogenetic analysis of endolysins was performed using MEGA X. In 438 phage genomes, 454 genes of endolysins were found. In the endolysin sequences found, eight different types of catalytic domains and seven types of cell wall binding domains were identified. The analysis showed that many types of endolysin domains have not yet been characterized experimentally. Studies of the properties of such domains will help to reveal the potential of endolysins for the creation of new antibacterial agents.
抗生素耐药性细菌病原体数量的不断增加是医学领域的一个严重问题。内溶素是噬菌体的溶菌酶,是一类具有抗菌特性的很有前景的酶。感染革兰氏阳性菌的噬菌体的内溶素具有模块化的结构域组织。这一特性可用于通过修饰或改组单个结构域来设计具有新特性或改进特性的酶。这项工作是对感染芽孢杆菌的噬菌体中发现的内溶素结构域多样性的详细分析。在这项工作过程中,创建了此类噬菌体的内溶素数据库,并使用NCBI数据库、RASTtk、BLASTp、HHpred和InterPro程序对它们的结构域结构进行了分析。使用MEGA X对内溶素进行了系统发育分析。在438个噬菌体基因组中,发现了454个内溶素基因。在所发现的内溶素序列中,鉴定出了八种不同类型的催化结构域和七种类型的细胞壁结合结构域。分析表明,许多类型的内溶素结构域尚未经过实验表征对此类结构域特性的研究将有助于揭示内溶素在开发新型抗菌剂方面的潜力。