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小RNA MicF在……中抑制ObgE和SeqA

The Small RNA MicF Represses ObgE and SeqA in .

作者信息

Stibelman Aaron Y, Sariles Amy Y, Takahashi Melissa K

机构信息

Department of Biology, California State University Northridge, Northridge, CA 91330, USA.

Department of Biosciences, Rice University, Houston, TX 77005, USA.

出版信息

Microorganisms. 2024 Nov 22;12(12):2397. doi: 10.3390/microorganisms12122397.

Abstract

Small regulatory RNAs (sRNA) have been shown to play a large role in the management of stress responses in and other bacteria. Upon fluctuations in nutrient availability and exposure to antimicrobials and superoxide-generating agents, the MicF sRNA in has been shown to regulate a small set of genes involved in the management of membrane permeability. Currently, it is unknown whether MicF acts on other processes to mediate the response to these agents. Using an sRNA interaction prediction tool, we identified genes in that are potentially regulated by MicF. Through subsequent analysis using a sfGFP-based reporter-gene fusion, we have validated two novel targets of MicF regulation: ObgE, a GTPase crucial for chromosome partitioning, and SeqA, a negative modulator of DNA replication. Importantly, the interaction between MicF and these target mRNAs is contingent upon the presence of the RNA chaperone protein, Hfq. Furthermore, our findings affirm the role of MicF's conserved 5' seed pairing region in initiating these regulatory interactions. Our study suggests that, beyond its established role in membrane permeability management, MicF exerts control over chromosome dynamics in response to distinct environmental cues, implicating a more multifaceted regulatory function in bacterial stress adaptation.

摘要

小调控RNA(sRNA)已被证明在大肠杆菌和其他细菌的应激反应调控中发挥重要作用。在营养物质可用性波动以及接触抗菌剂和超氧化物生成剂时,大肠杆菌中的MicF sRNA已被证明可调控一小部分参与膜通透性调控的基因。目前,尚不清楚MicF是否作用于其他过程来介导对这些因子的反应。使用sRNA相互作用预测工具,我们在大肠杆菌中鉴定出可能受MicF调控的基因。通过随后使用基于sfGFP的报告基因融合进行的分析,我们验证了MicF调控的两个新靶点:ObgE,一种对染色体分配至关重要的GTP酶,以及SeqA,一种DNA复制的负调节因子。重要的是,MicF与这些靶mRNA之间的相互作用取决于RNA伴侣蛋白Hfq的存在。此外,我们的研究结果证实了MicF保守的5'种子配对区域在启动这些调控相互作用中的作用。我们的研究表明,除了其在膜通透性调控中已确立的作用外,MicF还可响应不同的环境信号对染色体动态进行调控,这意味着其在细菌应激适应中具有更复杂的调控功能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ec3/11676804/9138ead37206/microorganisms-12-02397-g001.jpg

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