Lee Myunglip, Yi Sunghun, Choi Jiho, Park Yukyoung, Lim Chaehyeon, Kim Yucheol
Korea Food Research Institute (KFRI), Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun 55365, Jeollabuk-do, Republic of Korea.
National Institute of Fisheries Science (NIFS), 405, Gangbyeon-ro, Gunsan-si 54042, Jeonbuk-do, Republic of Korea.
Microorganisms. 2024 Nov 23;12(12):2402. doi: 10.3390/microorganisms12122402.
TFRC-KFRI-1, isolated from the gut of Manila Clam in the sediment of the West Sea of Korea, was investigated for its potential as a probiotic bacterium. This strain, belonging to the family , was previously classified as but later reclassified to the genus , known for species with bioremediation and probiotic properties. To evaluate its genomic features and potential applications, we performed draft-genome sequencing and analysis. The genome of TFRC-KFRI-1 was assembled into a 4,756,396 bp sequence with a 62.8% GC content. Genomic analysis suggested potential genes for carbohydrate degradation and lactic acid production. The strain exhibited high average nucleotide identity (ANI) and 16S rRNA similarity with HL22-2, further supporting its potential as a probiotic. This genome sequence provides valuable insights into the functional capabilities of TFRC-KFRI-1 and its potential applications in various industries, including aquaculture and food biotechnology. The genome sequence is available under GenBank accession number JBGJJB000000000.1, with related project information under BioProject PRJNA1147901 and Bio-Sample SAMN43173893.
从韩国西海沉积物中的马尼拉蛤肠道中分离出的TFRC-KFRI-1，作为益生菌的潜力得到了研究。该菌株属于 科，先前被归类为 ，但后来重新归类到 属，该属以具有生物修复和益生菌特性的物种而闻名。为了评估其基因组特征和潜在应用，我们进行了基因组草图测序和分析。TFRC-KFRI-1的基因组组装成一个4,756,396 bp的序列，GC含量为62.8%。基因组分析表明存在碳水化合物降解和乳酸生产的潜在基因。该菌株与HL22-2表现出高平均核苷酸同一性（ANI）和16S rRNA相似性，进一步支持了其作为益生菌的潜力。该基因组序列为TFRC-KFRI-1的功能能力及其在包括水产养殖和食品生物技术在内的各个行业的潜在应用提供了有价值的见解。该基因组序列可在GenBank登录号JBGJJB000000000.1下获得，相关项目信息在BioProject PRJNA1147901和Bio-Sample SAMN43173893下。
