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南海北部台湾西南部外海永安东脊冷泉区西伯加虫管蠕虫及其周围的微生物群落

Microbial Communities in and Around the Siboglinid Tubeworms from the South Yungan East Ridge Cold Seep Offshore Southwestern Taiwan at the Northern South China Sea.

作者信息

Li Yin, Ye Zhiwei, Lai Mei-Chin, Liu Char-Shine, Paull Charles K, Lin Saulwood, Lai Shu-Jung, You Yi-Ting, Wu Sue-Yao, Hung Chuan-Chuan, Ding Jiun-Yan, Shih Chao-Jen, Wu Yen-Chi, Zhao Jingjing, Xiao Wangchuan, Wu Chih-Hung, Dong Guowen, Zhang Hangying, Qiu Wanling, Wang Song, Chen Sheng-Chung

机构信息

School of Resources and Chemical Engineering, Sanming University, Sanming 365004, China.

Fujian Provincial Key Laboratory of Resources and Environmental Monitoring and Sustainable Management and Utilization, Sanming University, Sanming 365004, China.

出版信息

Microorganisms. 2024 Nov 28;12(12):2452. doi: 10.3390/microorganisms12122452.

DOI:10.3390/microorganisms12122452
PMID:39770655
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11676240/
Abstract

To date, only a few microbial community studies of cold seeps at the South China Sea (SCS) have been reported. The cold seep dominated by tubeworms was discovered at South Yungan East Ridge (SYER) offshore southwestern Taiwan by miniROV. The tubeworms were identified and proposed as sp. nov. through morphological and phylogenetic analyses. The endosymbionts in the trunk of analyzed by a 16S rRNA gene clone library represented only one phylotype, which belonged to the family Sedimenticolaceae in Gammaproteobacteria. In addition, the archaeal and bacterial communities in the habitat of tubeworm were investigated by using high-phylogenetic-resolution full-length 16S rRNA gene amplicon sequencing. The results showed that anerobic methane-oxidizing archaea (ANME)-1b was most abundant and ANME-2ab was minor in a consortia of the anerobic oxidation of methane (AOM). The known sulfate-reducing bacteria (SRB) partners in AOM consortia, such as SEEP-SRB1, -SRB2, and -SRB4, and , occurred in a small population (0-5.7%) at the SYER cold seep, and it was suggested that ANME-1b and ANME-2ab might be coupled with multiple SRB in AOM consortia. Besides AOM consortia, various methanogenic archaea, including Bathyarchaeota (Subgroup-8), Methanocellales, Methanomicrobiales, Methanosarcinales, Methanofastidiosales and Methanomassiliicoccales, were identified, and sulfur-oxidizing bacteria and in phylum Epsilonbacteraeota were dominant. This study revealed the first investigation of microbiota in and around tubeworm discovered at the SYER cold seep offshore southwestern Taiwan. We could gain insights into the chemosynthetic communities in the deep sea, especially regarding the cold seep ecosystems at the SCS.

摘要

迄今为止,关于南海冷泉微生物群落的研究报道较少。通过小型遥控水下机器人(miniROV)在台湾西南部近海的南永安东脊(SYER)发现了以管虫为主的冷泉。通过形态学和系统发育分析,对管虫进行了鉴定,并将其定为新物种。通过16S rRNA基因克隆文库分析,管虫躯干内的内共生菌仅代表一个系统发育型,属于γ-变形菌纲的沉积杆菌科。此外,利用高系统发育分辨率的全长16S rRNA基因扩增子测序技术,对管虫栖息地的古菌和细菌群落进行了研究。结果表明,在甲烷厌氧氧化(AOM)聚集体中,厌氧甲烷氧化古菌(ANME)-1b最为丰富,而ANME-2ab较少。AOM聚集体中已知的硫酸盐还原细菌(SRB)伙伴,如SEEP-SRB1、-SRB2和-SRB4,在SYER冷泉中数量较少(0-5.7%),这表明ANME-1b和ANME-2ab在AOM聚集体中可能与多种SRB耦合。除了AOM聚集体外,还鉴定出了各种产甲烷古菌,包括深海古菌(亚群-8)、甲烷杆菌目、甲烷微菌目、甲烷八叠球菌目、甲烷嗜热栖菌目和甲烷球形菌目,并且ε-变形菌门中的硫氧化细菌占主导地位。本研究首次对在台湾西南部近海SYER冷泉发现的管虫及其周围的微生物群进行了调查。我们可以深入了解深海中的化学合成群落,特别是关于南海的冷泉生态系统。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb4c/11676240/5fe9d2b2a1e6/microorganisms-12-02452-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb4c/11676240/e8f215058a34/microorganisms-12-02452-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb4c/11676240/9608c0643a3d/microorganisms-12-02452-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb4c/11676240/ad1ab2bbc7e4/microorganisms-12-02452-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb4c/11676240/47fe30ec10c5/microorganisms-12-02452-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb4c/11676240/5fe9d2b2a1e6/microorganisms-12-02452-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb4c/11676240/e8f215058a34/microorganisms-12-02452-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb4c/11676240/9608c0643a3d/microorganisms-12-02452-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb4c/11676240/ad1ab2bbc7e4/microorganisms-12-02452-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb4c/11676240/47fe30ec10c5/microorganisms-12-02452-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb4c/11676240/5fe9d2b2a1e6/microorganisms-12-02452-g005.jpg

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本文引用的文献

1
The mitochondrial genome of the deep-sea tubeworm (Siboglinidae, Annelida) and its phylogenetic implications.深海管虫(西伯加林科,环节动物门)的线粒体基因组及其系统发育意义。
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The vertical distribution of prokaryotes in the surface sediment of Jiaolong cold seep at the northern South China Sea.南海北部蛟龙冷泉表层沉积物中 prokaryotes 的垂直分布
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Methane-metabolizing microbial communities in sediments of the Haima cold seep area, northwest slope of the South China Sea.南海西北坡海马冷泉区沉积物中甲烷代谢微生物群落
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