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当归四逆汤治疗勃起功能障碍作用机制的分子对接与网络药理学研究

Molecular docking and network pharmacology research on the Danggui Sini Decoction's mechanism of action for treating erectile dysfunction.

作者信息

Yan Xinyu, Zhang Yiyi, Mo Jingwen, Xu Lindong, Shi Keyu, Zhou Yi

机构信息

College of Basic Medicine, Chengdu University of Traditional Chinese Medicine, Chengdu, China.

出版信息

Medicine (Baltimore). 2024 Nov 22;103(47):e40529. doi: 10.1097/MD.0000000000040529.

Abstract

Utilizing network pharmacology and molecular docking, we evaluated the possible pharmacological mechanism of Danggui Sini Decoction (DGSND) for treating erectile dysfunction (ED). DGSND's chemical components and targets were found utilizing the Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform (TCMSP). Disease-related genes associated with ED were identified through GeneCards, OMIM, TTD, DrugBank, and DisGeNET databases. These datasets intersected to identify possible DGSND targets for treating ED. We developed an interactive visual network that linked herbs, active components, diseases, and targets using Cytoscape 3.7.1. The protein-protein interactions (PPI) were analyzed using the STRING database. The DAVID database was used to conduct gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment studies to determine the mechanism of action of the discovered genes. The pathways most strongly associated with ED were analyzed through histograms and bubble maps. From the PPI network, the 6 promising targets were selected for molecular docking with the top ranked compounds in terms of degree value. DGSND contains 7 Chinese herbal medicines, 142 main components, and 73 latent targets for treating ED. GO and KEGG analyses suggest that DGSND may have the ability to modulate oxidative stress, apoptosis, and inflammatory responses. Through the PPI network and topology analysis, 6 core genes were pinpointed. Molecular docking revealed that beta-sitosterol exhibited the lowest binding energy with BCL2, indicating a more stable structure. This study demonstrates that DGSND's compounds stimulate NO synthesis and reduce inflammation and cell apoptosis to improve ED by acting on AKTI, ALB, IL6, TNF, TP53, and BCL2. The findings show that DGSND's compounds These findings offer a valuable scientific foundation for further understanding the mechanism of DGSND in treating ED.

摘要

利用网络药理学和分子对接技术,我们评估了当归四逆汤(DGSND)治疗勃起功能障碍(ED)的可能药理机制。利用中药系统药理学数据库及分析平台(TCMSP)查找DGSND的化学成分和靶点。通过GeneCards、OMIM、TTD、DrugBank和DisGeNET数据库鉴定与ED相关的疾病相关基因。这些数据集交叉以确定DGSND治疗ED的可能靶点。我们使用Cytoscape 3.7.1开发了一个交互式可视化网络,将草药、活性成分、疾病和靶点联系起来。使用STRING数据库分析蛋白质-蛋白质相互作用(PPI)。利用DAVID数据库进行基因本体(GO)和京都基因与基因组百科全书(KEGG)通路富集研究,以确定所发现基因的作用机制。通过直方图和气泡图分析与ED最密切相关的通路。从PPI网络中,选择6个有前景的靶点与度值排名靠前的化合物进行分子对接。DGSND包含7种中药、142种主要成分和73个治疗ED的潜在靶点。GO和KEGG分析表明,DGSND可能具有调节氧化应激、细胞凋亡和炎症反应的能力。通过PPI网络和拓扑分析,确定了6个核心基因。分子对接显示,β-谷甾醇与BCL2的结合能最低,表明结构更稳定。本研究表明,DGSND的化合物通过作用于AKTI、ALB、IL6、TNF、TP53和BCL2来刺激一氧化氮合成,减少炎症和细胞凋亡,从而改善ED。研究结果为进一步了解DGSND治疗ED的机制提供了有价值的科学依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/37ff/11596949/d8787835b61f/medi-103-e40529-g001.jpg

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