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利用人工智能、分子对接和混合方法进行药物重新利用:普通疾病与阿尔茨海默病的综合综述

Drug repurposing using artificial intelligence, molecular docking, and hybrid approaches: A comprehensive review in general diseases vs Alzheimer's disease.

作者信息

Zulhafiz Natasha Azeelen, Teoh Teow-Chong, Chin Ai-Vyrn, Chang Siow-Wee

机构信息

Bioinformatics Programme, Institute of Biological Sciences, Faculty of Science, Universiti Malaya, Kuala Lumpur 50603, Malaysia.

Bioinformatics Programme, Institute of Biological Sciences, Faculty of Science, Universiti Malaya, Kuala Lumpur 50603, Malaysia; Institute of Ocean & Earth Sciences (IOES), Advanced Studies Complex, Universiti Malaya, Lembah Pantai, Kuala Lumpur 50603, Malaysia.

出版信息

Comput Methods Programs Biomed. 2025 Apr;261:108604. doi: 10.1016/j.cmpb.2025.108604. Epub 2025 Jan 13.

Abstract

BACKGROUND

Alzheimer's disease (AD), the most prevalent form of dementia, remains enigmatic in its origins despite the widely accepted "amyloid hypothesis," which implicates amyloid-beta peptide aggregates in its pathogenesis and progression. Despite advancements in technology and healthcare, the incidence of AD continues to rise. The traditional drug development process remains time-consuming, often taking years to bring an AD treatment to market. Drug repurposing has emerged as a promising strategy for developing cost-effective and efficient therapeutic options by identifying new uses for existing approved drugs, thus accelerating drug development.

OBJECTIVES

This study aimed to examine two key drug repurposing methodologies in general diseases and specifically in AD, which are artificial intelligent (AI) approach and molecular docking approach. In addition, the hybrid approach that integrates AI with molecular docking techniques will be explored too.

METHODOLOGY

This study systematically compiled a comprehensive collection of relevant academic articles, scientific papers, and research studies which were published up until November 2024 (as of the writing of this review paper). The final selection of papers was filtered to include studies related to Alzheimer's disease and general diseases, and then categorized into three groups: AI articles, molecular docking articles, and hybrid articles.

RESULTS

As a result, 331 papers were identified that employed AI for drug repurposing in general diseases, and 58 papers focused specifically in AD. For molecular docking in drug repurposing, 588 papers addressed general diseases, while 46 papers were dedicated to AD. The hybrid approach combining AI and molecular docking in drug repurposing has 52 papers for general diseases and 9 for AD. A comparative review was done across the methods, results, strengths, and limitations in those studies. Challenges of drug repurposing in AD are explored and future prospects are proposed.

DISCUSSION AND CONCLUSION

Drug repurposing emerges as a compelling and effective strategy within AD research. Both AI and molecular docking methods exhibit significant potential in this domain. AI algorithms yield more precise predictions, thus facilitating the exploration of new therapeutic avenues for existing drugs. Similarly, molecular docking techniques revolutionize drug-target interaction modelling, employing refined algorithms to screen extensive drug databases against specific target proteins. This review offers valuable insights for guiding the utilization of AI, molecular docking, or their hybrid in AD drug repurposing endeavors. The hope is to speed up the timeline of drug discovery which could improve the therapeutic approach to AD.

摘要

背景

阿尔茨海默病(AD)是最常见的痴呆形式,尽管被广泛接受的“淀粉样蛋白假说”认为淀粉样β肽聚集体在其发病机制和进展中起作用,但其起源仍然成谜。尽管技术和医疗保健有所进步,但AD的发病率仍在持续上升。传统的药物开发过程仍然耗时,通常需要数年时间才能将AD治疗药物推向市场。药物再利用已成为一种有前景的策略,通过确定现有获批药物的新用途来开发具有成本效益和高效的治疗选择,从而加速药物开发。

目的

本研究旨在考察一般疾病尤其是AD中的两种关键药物再利用方法,即人工智能(AI)方法和分子对接方法。此外,还将探索将AI与分子对接技术相结合的混合方法。

方法

本研究系统地收集了截至2024年11月(撰写本综述论文时)发表的相关学术文章、科学论文和研究。最终筛选出的论文包括与阿尔茨海默病和一般疾病相关的研究,然后分为三组:AI文章、分子对接文章和混合文章。

结果

结果发现,有331篇论文在一般疾病的药物再利用中采用了AI,58篇论文专门针对AD。在药物再利用的分子对接方面,有588篇论文涉及一般疾病,46篇论文专门针对AD。将AI和分子对接结合用于药物再利用的混合方法,针对一般疾病有52篇论文,针对AD有9篇论文。对这些研究中的方法、结果、优势和局限性进行了比较综述。探讨了AD中药物再利用的挑战并提出了未来前景。

讨论与结论

药物再利用在AD研究中是一种引人注目的有效策略。AI和分子对接方法在该领域都显示出巨大潜力。AI算法能产生更精确的预测,从而有助于探索现有药物的新治疗途径。同样,分子对接技术彻底改变了药物 - 靶点相互作用建模,采用精细算法针对特定靶蛋白筛选庞大的药物数据库。本综述为指导在AD药物再利用工作中使用AI、分子对接或它们的混合方法提供了有价值的见解。希望加快药物发现的时间表,从而改善AD的治疗方法。

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