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Gut phages and their interactions with bacterial and mammalian hosts.

作者信息

Godsil Marshall, Ritz Nathaniel L, Venkatesh Siddarth, Meeske Alexander J

机构信息

Department of Microbiology, University of Washington, Seattle, Washington, USA.

Institute for Systems Biology, Seattle, Washington, USA.

出版信息

J Bacteriol. 2025 Feb 20;207(2):e0042824. doi: 10.1128/jb.00428-24. Epub 2025 Jan 23.


DOI:10.1128/jb.00428-24
PMID:39846747
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11844821/
Abstract

The mammalian gut microbiome is a dense and diverse community of microorganisms that reside in the distal gastrointestinal tract. In recent decades, the bacterial members of the gut microbiome have been the subject of intense research. Less well studied is the large community of bacteriophages that reside in the gut, which number in the billions of viral particles per gram of feces, and consist of considerable unknown viral "dark matter." This community of gut-residing bacteriophages, called the gut "phageome," plays a central role in the gut microbiome through predation and transformation of native gut bacteria, and through interactions with their mammalian hosts. In this review, we will summarize what is known about the composition and origins of the gut phageome, as well as its role in microbiome homeostasis and host health. Furthermore, we will outline the interactions of gut phages with their bacterial and mammalian hosts, and plot a course for the mechanistic study of these systems.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97ed/11844821/46e1e2faa41f/jb.00428-24.f004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97ed/11844821/845b45b6e58d/jb.00428-24.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97ed/11844821/20aeb45683e3/jb.00428-24.f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97ed/11844821/d55f498c7c92/jb.00428-24.f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97ed/11844821/46e1e2faa41f/jb.00428-24.f004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97ed/11844821/845b45b6e58d/jb.00428-24.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97ed/11844821/20aeb45683e3/jb.00428-24.f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97ed/11844821/d55f498c7c92/jb.00428-24.f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/97ed/11844821/46e1e2faa41f/jb.00428-24.f004.jpg

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[1]
Gut phages and their interactions with bacterial and mammalian hosts.

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[4]
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[5]
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[6]
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[7]
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[8]
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[9]
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[10]
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本文引用的文献

[1]
Stable coexistence between an archaeal virus and the dominant methanogen of the human gut.

Nat Commun. 2024-9-4

[2]
Long-read sequencing reveals extensive gut phageome structural variations driven by genetic exchange with bacterial hosts.

Sci Adv. 2024-8-16

[3]
Dynamics of CRISPR-mediated virus-host interactions in the human gut microbiome.

ISME J. 2024-1-8

[4]
The interplay between diet and the gut microbiome: implications for health and disease.

Nat Rev Microbiol. 2024-11

[5]
Overcoming donor variability and risks associated with fecal microbiota transplants through bacteriophage-mediated treatments.

Microbiome. 2024-7-1

[6]
Bacteriophage defends murine gut from Escherichia coli invasion via mucosal adherence.

Nat Commun. 2024-6-4

[7]
The defensome of complex bacterial communities.

Nat Commun. 2024-3-8

[8]
A metagenomic catalog of the early-life human gut virome.

Nat Commun. 2024-2-29

[9]
Escherichia coli CRISPR arrays from early life fecal samples preferentially target prophages.

ISME J. 2024-1-8

[10]
The gut virome is associated with stress-induced changes in behaviour and immune responses in mice.

Nat Microbiol. 2024-2

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