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一种基于染色体规模的基因组以及基于转录组筛选促进三萜生物合成的光诱导基因。

A Chromosome-Scale Genome of and Transcriptome-Based Screening for Light-Induced Genes That Promote Triterpene Biosynthesis.

作者信息

Yang Yang, Hu Xuebo

机构信息

Institute for Medicinal Plants, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.

Innovation Academy of International Traditional Chinese Medicinal Materials, Huazhong Agricultural University, Wuhan 430070, China.

出版信息

J Fungi (Basel). 2025 Jan 20;11(1):81. doi: 10.3390/jof11010081.

Abstract

is an important fungus with medicinal properties and a significant role in lignocellulose degradation. In this study, we constructed a high-quality chromosome-level genome of using Illumina, PacBio HiFi, and Hi-C sequencing technologies. The assembled genome is 47.42 Mb in size and contains 13,307 protein-coding genes. BUSCO analysis revealed genome and gene completeness results of 95.80% and 95.90%, respectively. Phylogenetic analysis showed that is most closely related to , followed by and . Comparative genomic analysis identified 266 syntenic blocks between and , indicating a conserved evolutionary pattern between the two species. Gene family analysis highlighted the expansion and contraction of genes in functional categories related to the biosynthesis of secondary metabolites, including several -specific genes. Key genes involved in lignocellulose degradation and triterpene production were identified within the CAZyme and CYP450 gene families. Transcriptomic analysis under dark and light conditions revealed significant changes in the expression of genes related to secondary metabolism, suggesting that light signals regulate metabolic pathways. A total of 2577 transporter proteins and 2582 membrane proteins were identified and mapped in the genome, and 33 secondary metabolite gene clusters were identified, including two light-sensitive triterpene biosynthesis clusters. This study offers a comprehensive genomic resource for further investigation into the functional genomics, metabolic regulation, and triterpene biosynthesis of , providing valuable insights into fungal evolution and biotechnological applications.

摘要

是一种具有药用特性且在木质纤维素降解中起重要作用的重要真菌。在本研究中,我们使用Illumina、PacBio HiFi和Hi-C测序技术构建了高质量的染色体水平基因组。组装后的基因组大小为47.42 Mb,包含13307个蛋白质编码基因。BUSCO分析显示基因组和基因完整性结果分别为95.80%和95.90%。系统发育分析表明,与关系最为密切,其次是和。比较基因组分析确定了和之间有266个共线性区域,表明这两个物种之间存在保守的进化模式。基因家族分析突出了与次生代谢物生物合成相关功能类别中基因的扩增和收缩,包括几个特定的基因。在CAZyme和CYP450基因家族中鉴定出了参与木质纤维素降解和三萜产生的关键基因。在黑暗和光照条件下的转录组分析揭示了与次生代谢相关基因表达的显著变化,表明光信号调节代谢途径。在基因组中总共鉴定并定位了2577个转运蛋白和2582个膜蛋白,还鉴定出了33个次生代谢物基因簇,包括两个对光敏感的三萜生物合成簇。本研究为进一步研究的功能基因组学、代谢调控和三萜生物合成提供了全面的基因组资源,为真菌进化和生物技术应用提供了有价值的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/56ed/11766705/08dcdf9f471b/jof-11-00081-g001.jpg

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