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基于转录组学筛选的近完整基因组及光诱导基因促进三萜类化合物的产生。

The Nearly Complete Genome of and Light-Induced Genes Screened Based on Transcriptomics Promote the Production of Triterpenoid Compounds.

作者信息

Yang Yang, Hu Xuebo

机构信息

Institute for Medicinal Plants, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.

Innovation Academy of International Traditional Chinese Medicinal Materials, Huazhong Agricultural University, Wuhan 430070, China.

出版信息

J Fungi (Basel). 2025 Apr 18;11(4):322. doi: 10.3390/jof11040322.

Abstract

, commonly known as turkey tail, is a valuable fungus with medicinal and culinary uses, rich in bioactive compounds like triterpenoid polysaccharides that contribute to health benefits. Here, we constructed a nearly complete genome of CH1 using Illumina, PacBio HiFi, and Hi-C sequencing technologies, resulting in a 35.74 Mb genome with 12,526 protein-coding genes. The genome spans 12 chromosomes, all with intact telomeric structures and no gaps. The BUSCO completeness scores of 95.1% and 99.1% for the genome and genes, respectively, indicate high assembly quality and high completeness of gene prediction. Phylogenetic analysis showed a close relationship between CH1 and . Transcriptomic analysis under varying light conditions showed changes in the expression of genes, especially those related to terpenoid synthesis, with several CAZymes and CYP450 genes also exhibiting light-induced variations. Ten triterpenoid secondary metabolite gene clusters were identified, three of which were light-sensitive, indicating that light exposure regulates triterpenoid metabolism. This study provides valuable data supporting the high-quality genome of and offers new insights into the light-induced regulation of its metabolism.

摘要

,通常被称为云芝,是一种具有药用和烹饪用途的珍贵真菌,富含三萜类多糖等生物活性化合物,对健康有益。在此,我们使用Illumina、PacBio HiFi和Hi-C测序技术构建了CH1的近乎完整的基因组,得到了一个35.74 Mb的基因组,其中包含12526个蛋白质编码基因。该基因组跨越12条染色体,所有染色体均具有完整的端粒结构且无间隙。基因组和基因的BUSCO完整性得分分别为95.1%和99.1%,表明组装质量高且基因预测的完整性高。系统发育分析表明CH1与 之间存在密切关系。不同光照条件下的转录组分析显示基因表达发生变化,尤其是与萜类合成相关的基因,几个碳水化合物活性酶(CAZymes)和细胞色素P450(CYP450)基因也表现出光诱导的变化。鉴定出10个三萜类次生代谢物基因簇,其中3个对光敏感,表明光照调节三萜类代谢。本研究提供了支持高质量基因组的数据,并为其代谢的光诱导调节提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8ab/12028448/3ac419a3ea08/jof-11-00322-g001.jpg

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