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来自一只灰狼(Canis lupus)胃肠道的两个种分离株的表型和全基因组序列完整参考分析。

Phenotypic and Complete Reference Whole Genome Sequence Analyses of Two spp. Isolates from a Gray Wolf () Gastrointestinal Tract.

作者信息

Bryant Jessika L, McCabe Jennifer, Klews C Cristoph, Johnson MiCayla, Atchley Ariel N, Cousins Thomas W, Barnard-Davidson Maya, Smith Kristina M, Ackermann Mark R, Netherland Michael, Hasan Nur A, Jordan Peter A, Forsythe Evan S, Ball Patrick N, Seal Bruce S

机构信息

Biology Program, Oregon State University-Cascades, 1500 SW Chandler Avenue, Bend, OR 97702, USA.

Oregon Veterinary Diagnostic Laboratory, OSU Carlson College of Veterinary Medicine, 134 Magruder Hall, 700 SW 30th, Corvallis, OR 97331, USA.

出版信息

Vet Sci. 2025 Jan 13;12(1):51. doi: 10.3390/vetsci12010051.

DOI:10.3390/vetsci12010051
PMID:39852926
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11769508/
Abstract

Inflammatory bowel disease (IBD) is increasing among mammals around the world, and domestic dogs are no exception. There is no approved cure for canine IBD with limited treatment options. Novel probiotic bacteria discovery from free-ranging animals for the treatment of IBD in domestic pets can likely yield promising probiotic candidates. Consequently, the overall aim was to isolate bacteria from free-ranging animals that could potentially be utilized as novel probiotics. Two bacteria identified as unique spp. strains by small ribosomal RNA (16S) gene sequencing were isolated from the gastrointestinal tract of a North American Gray Wolf (). The bacteria were typed as Gram-variable, and both were catalase/oxidase positive as well as sensitive to commonly used antibiotics. The bacteria digested complex carbohydrates and lipids by standard assays. The isolated bacteria also inhibited the growth of and . The whole genome sequence (WGS) length of bacterial isolate ClWae17B was 6,939,193 bp, while ClWae19 was 7,032,512 bp, both similar in size to other spp. The genomes of both bacteria encoded enzymes involved with the metabolism of complex starches and lipids, such as lyases and pectinases, along with encoding antimicrobials such as lanthipeptides, lasso peptides, and cyclic-lactone-autoinducers. No pernicious virulence genes were identified in the WGS of either bacterial isolate. Phylogenetically, the most closely related bacteria based on 16S gene sequences and WGS were for ClWae17B and for ClWae19. WGS analyses and phenotypic assays supported the hypothesis that the isolates described constitute two novel candidate probiotic bacteria for potential use in dogs.

摘要

炎症性肠病(IBD)在世界各地的哺乳动物中呈上升趋势,家犬也不例外。犬IBD尚无获批的治愈方法,治疗选择有限。从自由放养动物中发现新型益生菌用于治疗家养宠物的IBD,可能会产生有前景的益生菌候选菌株。因此,总体目标是从自由放养动物中分离出可能用作新型益生菌的细菌。通过小核糖体RNA(16S)基因测序鉴定为独特菌种的两种细菌,是从一只北美灰狼的胃肠道中分离出来的。这些细菌革兰氏染色可变,过氧化氢酶/氧化酶均呈阳性,且对常用抗生素敏感。通过标准检测方法发现这些细菌能消化复杂碳水化合物和脂质。分离出的细菌还抑制了[此处原文缺失两种菌名]的生长。细菌分离株ClWae17B的全基因组序列(WGS)长度为6,939,193 bp,而ClWae19为7,032,512 bp,两者大小与其他[此处原文缺失菌属名]相似。这两种细菌的基因组都编码了参与复杂淀粉和脂质代谢的酶,如裂合酶和果胶酶,同时还编码了抗菌肽,如羊毛硫肽、套索肽和环内酯自诱导物。在任何一种细菌分离株的WGS中均未鉴定出有害的毒力基因。从系统发育角度来看,基于16S基因序列和WGS,与ClWae17B亲缘关系最密切的细菌是[此处原文缺失菌名],与ClWae19亲缘关系最密切的细菌是[此处原文缺失菌名]。WGS分析和表型检测支持了这样一种假设,即所描述的分离株构成了两种新型的候选益生菌,可能用于犬类。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee4e/11769508/4946aea354e2/vetsci-12-00051-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee4e/11769508/c0539a6b68b5/vetsci-12-00051-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee4e/11769508/79fa29193c0c/vetsci-12-00051-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee4e/11769508/ad84238be891/vetsci-12-00051-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee4e/11769508/1f1fe289ab02/vetsci-12-00051-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee4e/11769508/4946aea354e2/vetsci-12-00051-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee4e/11769508/c0539a6b68b5/vetsci-12-00051-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee4e/11769508/79fa29193c0c/vetsci-12-00051-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee4e/11769508/ad84238be891/vetsci-12-00051-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee4e/11769508/1f1fe289ab02/vetsci-12-00051-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee4e/11769508/4946aea354e2/vetsci-12-00051-g005.jpg

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