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北美灰狼胃肠道分离出的一种新型独特序列型的参考全基因组序列分析与特征描述

Reference Whole Genome Sequence Analyses and Characterization of a Novel Distinct Sequence Type Isolated from a North American Gray Wolf () Gastrointestinal Tract.

作者信息

Klews C Cristoph, Bryant Jessika L, McCabe Jennifer, Atchley Ariel N, Cousins Thomas W, Barnard-Davidson Maya, Ackermann Mark R, Netherland Michael, Hasan Nur A, Jordan Peter A, Forsythe Evan S, Ball Patrick N, Seal Bruce S

机构信息

Biology Program, Oregon State University-Cascades, 1500 SW Chandler Avenue, Bend, OR 97702, USA.

Oregon Veterinary Diagnostic Laboratory, OSU Carlson College of Veterinary Medicine, 134 Magruder Hall, 700 SW 30th, Corvallis, OR 97331, USA.

出版信息

Vet Sci. 2025 Apr 27;12(5):410. doi: 10.3390/vetsci12050410.

Abstract

We hypothesize that bacteria isolated from free-ranging animals could potentially be useful for practical applications. To meet this objective a Gram-positive bacterium was isolated from the gastrointestinal (GI) tract of a Gray Wolf () using Brucella broth with hemin and vitamin K (BBHK). By small ribosomal RNA (16S) gene sequencing the bacterium was initially identified as a novel strain. The bacterium could be propagated both anaerobically and aerobically and was both catalase/oxidase negative and negative by the starch hydrolysis as well as negative using lipase assays. The reference whole genome sequence (WGS) was obtained using both Illumina and Nanopore sequencing. The genome assembly was 3,512,202 bp in length, encoding core bacterial genes with a GC% content of 34.48. No lysogenic bacteriophage genes were detected, although the genome harbors genes for the expression of bacteriocin and other secondary metabolites with potential antimicrobial properties. Multilocus sequence typing (MLST), WGS phylogenetics, average nucleotide identity (ANI), and single nucleotide polymorphism (SNP) analyses of the isolate's genome indicate this bacterium is a newly identified sequence type (ST). Members of the Carnobacteria have anti- activities, highlighting their potential functional properties. Consequently, the isolate could be a potential probiotic for canids and this is the first report on an axenic culture from the genus .

摘要

我们推测,从自由放养动物中分离出的细菌可能具有实际应用价值。为实现这一目标,我们使用含血红素和维生素K的布鲁氏菌肉汤(BBHK)从一只灰狼的胃肠道中分离出了一种革兰氏阳性细菌。通过小核糖体RNA(16S)基因测序,该细菌最初被鉴定为一种新型菌株。该细菌既能在厌氧条件下也能在需氧条件下繁殖,过氧化氢酶/氧化酶检测呈阴性,淀粉水解试验呈阴性,脂肪酶检测也呈阴性。我们使用Illumina和纳米孔测序技术获得了该细菌的参考全基因组序列(WGS)。基因组组装长度为3,512,202 bp,编码核心细菌基因,GC含量为34.48%。尽管该基因组含有用于表达细菌素和其他具有潜在抗菌特性的次级代谢产物的基因,但未检测到溶原性噬菌体基因。对该分离株基因组的多位点序列分型(MLST)、WGS系统发育分析、平均核苷酸同一性(ANI)和单核苷酸多态性(SNP)分析表明,该细菌是一种新鉴定的序列类型(ST)。肉食杆菌属成员具有抗菌活性,突出了它们潜在的功能特性。因此,该分离株可能是犬科动物的潜在益生菌,这是关于该属无菌培养物的首次报道。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7c5c/12115997/9f3a19667aa3/vetsci-12-00410-g001.jpg

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