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墨西哥主要流行谱系的基因组分析。

Genomic analysis of the main epidemiological lineages of in Mexico.

作者信息

Humberto Barrios-Camacho, Luis Lozano-Aguirre, Josefina Duran-Bedolla

机构信息

Centro de Investigación Sobre Enfermedades Infecciosas (CISEI), Departamento de Diagnóstico Epidemiológico, Instituto Nacional de Salud Pública (INSP), Cuernavaca, Mexico.

Programa de Genómica Evolutiva, Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, Mexico.

出版信息

Front Cell Infect Microbiol. 2025 Jan 10;14:1499839. doi: 10.3389/fcimb.2024.1499839. eCollection 2024.

DOI:10.3389/fcimb.2024.1499839
PMID:39867342
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11757933/
Abstract

has emerged as a critical global health threat due to its exceptional survival skills in adverse environment and its ability to acquire antibiotic resistance, presenting significant challenges for infection treatment and control. The World Health Organization has classified carbapenem-resistant as a "Critical Priority" pathogen to guide research and the development of control and prevention strategies. Epidemiological surveillance methodologies provide the tools necessary for classifying into international clonal lineages, facilitating the analysis of molecular characteristics, global dissemination, and evolution. This study provides a detailed analysis of the molecular epidemiology of in Mexico, focusing on identifying the main international clonal lineages. Genomic analyses of 146 genomes, along with information from previous studies, identified 24 different sequence types according to the Oxford Scheme. The major international clone IC2 (CC208) was identified and harbors β-lactamases OXA-66, ADC-30, OXA-72, and is predicted to possess the OCL1 locus. The international clone IC5 (CC205) carries β-lactamase OXA-65, along with ADC-214 and OXA-239, with OCL10 predicted in 82.2% of the genomes. The international clone IC7 (CC229) harbors β-lactamase OXA-64, as well as ADC-174 and ADC-214, with OCL6 and OCL7 loci predicted. These international clones were identified in different periods and regions of Mexico and are likely to be widely distributed throughout the country. The analysis of each lineage reveals distinct molecular characteristics, including sequence types, capsule typing, outer core loci, and specific antibiotic resistance profiles. Understanding these features is crucial for elucidating their roles in infection dynamics, resistance mechanisms, and their impact on clinical outcomes.

摘要

由于其在不利环境中卓越的生存能力以及获得抗生素耐药性的能力,它已成为全球重大的健康威胁,给感染治疗和控制带来了巨大挑战。世界卫生组织已将耐碳青霉烯类[细菌名称未给出,此处假设为某细菌]列为“关键优先”病原体,以指导相关研究以及控制和预防策略的制定。流行病学监测方法提供了将[细菌名称未给出,此处假设为某细菌]分类为国际克隆谱系的必要工具,有助于分析其分子特征、全球传播情况及进化过程。本研究对墨西哥[细菌名称未给出,此处假设为某细菌]的分子流行病学进行了详细分析,重点是识别主要的国际克隆谱系。对146个基因组的基因组分析以及先前研究的信息,根据牛津方案确定了24种不同的序列类型。鉴定出主要的国际克隆IC2(CC208),其携带β-内酰胺酶OXA-66、ADC-30、OXA-72,并预计拥有OCL1位点。国际克隆IC5(CC205)携带β-内酰胺酶OXA-65,以及ADC-214和OXA-239,在82.2%的基因组中预测有OCL10。国际克隆IC7(CC229)携带β-内酰胺酶OXA-64以及ADC-174和ADC-214,预测有OCL6和OCL7位点。这些国际克隆在墨西哥的不同时期和地区被识别出来,并且可能在全国广泛分布。对每个谱系的分析揭示了不同的分子特征,包括序列类型、荚膜分型、外核心位点以及特定的抗生素耐药谱。了解这些特征对于阐明它们在感染动态、耐药机制及其对临床结果的影响方面的作用至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b927/11757933/641af01ea566/fcimb-14-1499839-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b927/11757933/4c22b3ba2454/fcimb-14-1499839-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b927/11757933/c97e731eb7de/fcimb-14-1499839-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b927/11757933/641af01ea566/fcimb-14-1499839-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b927/11757933/4c22b3ba2454/fcimb-14-1499839-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b927/11757933/c97e731eb7de/fcimb-14-1499839-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b927/11757933/641af01ea566/fcimb-14-1499839-g003.jpg

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IC2 and IC5 Isolates with Co-Existing and and Exhibiting Strong Biofilm Formation in a Mexican Hospital.在一家墨西哥医院中,IC2和IC5分离株同时存在且表现出强烈的生物膜形成能力。
Microorganisms. 2023 Sep 14;11(9):2316. doi: 10.3390/microorganisms11092316.
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International Clones of High Risk of Acinetobacter Baumannii-Definitions, History, Properties and Perspectives.鲍曼不动杆菌国际高风险克隆株——定义、历史、特性与展望
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Whole genome analysis of Gram-negative bacteria using the EPISEQ CS application and other bioinformatic platforms.使用 EPISEQ CS 应用程序和其他生物信息学平台对革兰氏阴性菌进行全基因组分析。
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CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database.CARD 2023:在全面抗生素耐药性数据库中进行扩展的策展、对机器学习的支持以及耐药组预测。
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