Ahmed S S, Alp E, Ulu-Kilic A, Dinc G, Aktas Z, Ada B, Bagirova F, Baran I, Ersoy Y, Esen S, Guven T G, Hopman J, Hosoglu S, Koksal F, Parlak E, Yalcin A N, Yilmaz G, Voss A, Melchers W
Faculty of Infectious Diseases, Erciyes University, Kayseri, Turkey.
Genome and Stem Cell Center, Erciyes University, Kayseri, Turkey.
Eur J Clin Microbiol Infect Dis. 2016 Sep;35(9):1463-8. doi: 10.1007/s10096-016-2685-x. Epub 2016 Jun 4.
Epidemic clones of Acinetobacter baumannii, described as European clones I, II, and III, are associated with hospital epidemics throughout the world. We aimed to determine the molecular characteristics and genetic diversity between European clones I, II, and III from Turkey and Azerbaijan. In this study, a total of 112 bloodstream isolates of carbapenem-resistant Acinetobacter spp. were collected from 11 hospitals across Turkey and Azerbaijan. The identification of Acinetobacter spp. using conventional and sensitivity tests was performed by standard criteria. Multiplex polymerase chain reaction (PCR) was used to detect OXA carbapenemase-encoding genes (bla OXA-23-like, bla OXA-24-like, bla OXA-51-like, and bla OXA-58-like). Pulsed-field gel electrophoresis (PFGE) typing was used to investigate genetic diversity. The bla OXA-51-like gene was present in all 112 isolates, 75 (67 %) carried bla OXA-23-like, 7 (6.2 %) carried bla OXA-58-like genes, and 5 (4.5 %) carried bla OXA-24-like genes. With a 90 % similarity cut-off value, 15 clones and eight unique isolates were identified. The largest clone was cluster D, with six subtypes. Isolates from clusters D and I were widely spread in seven different geographical regions throughout Turkey. However, F cluster was found in the northern and eastern regions of Turkey. EU clone I was grouped within J cluster with three isolates found in Antalya, Istanbul, and Erzurum. EU clone II was grouped in the U cluster with 15 isolates and found in Kayseri and Diyarbakır. The bla OXA-24-like gene in carbapenemases was identified rarely in Turkey and has been reported for the first time from Azerbaijan. Furthermore, this is the first multicenter study in Turkey and Azerbaijan to identify several major clusters belonging to European clones I and II of A. baumannii.
鲍曼不动杆菌的流行克隆,被描述为欧洲克隆I、II和III,与世界各地的医院疫情相关。我们旨在确定来自土耳其和阿塞拜疆的欧洲克隆I、II和III之间的分子特征和遗传多样性。在本研究中,共从土耳其和阿塞拜疆的11家医院收集了112株耐碳青霉烯类不动杆菌属的血流分离株。使用常规和敏感性试验按照标准标准对不动杆菌属进行鉴定。采用多重聚合酶链反应(PCR)检测编码OXA碳青霉烯酶的基因(bla OXA - 23样、bla OXA - 24样、bla OXA - 51样和bla OXA - 58样)。使用脉冲场凝胶电泳(PFGE)分型来研究遗传多样性。所有112株分离株中均存在bla OXA - 51样基因,75株(67%)携带bla OXA - 23样基因,7株(6.2%)携带bla OXA - 58样基因,5株(4.5%)携带bla OXA - 24样基因。以90%的相似性截断值,鉴定出15个克隆和8个独特分离株。最大的克隆是D簇,有6个亚型。来自D簇和I簇的分离株广泛分布于土耳其的7个不同地理区域。然而,F簇在土耳其北部和东部地区被发现。欧盟克隆I与在安塔利亚、伊斯坦布尔和埃尔祖鲁姆发现的3株分离株归为J簇。欧盟克隆II与15株分离株归为U簇,在开塞利和迪亚巴克尔被发现。碳青霉烯酶中的bla OXA - 24样基因在土耳其很少被鉴定到,并且首次在阿塞拜疆被报道。此外,这是土耳其和阿塞拜疆首次进行的多中心研究,以鉴定属于鲍曼不动杆菌欧洲克隆I和II的几个主要簇。