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鲍曼不动杆菌国际高风险克隆株——定义、历史、特性与展望

International Clones of High Risk of Acinetobacter Baumannii-Definitions, History, Properties and Perspectives.

作者信息

Shelenkov Andrey, Akimkin Vasiliy, Mikhaylova Yulia

机构信息

Central Research Institute of Epidemiology, Novogireevskaya Str., 3a, 111123 Moscow, Russia.

出版信息

Microorganisms. 2023 Aug 19;11(8):2115. doi: 10.3390/microorganisms11082115.

Abstract

is a Gram-negative coccobacillus with exceptional survival skills in an unfavorable environment and the ability to rapidly acquire antibiotic resistance, making it one of the most successful hospital pathogens worldwide, representing a serious threat to public health. The global dissemination of is driven by several lineages named 'international clones of high risk' (ICs), two of which were first revealed in the 1970s. Epidemiological surveillance is a crucial tool for controlling the spread of this pathogen, which currently increasingly involves whole genome sequencing. However, the assignment of a particular isolate to some IC based on its genomic sequence is not always straightforward and requires some computational skills from researchers, while the definitions found in the literature are sometimes controversial. In this review, we will focus on typing tools suitable for IC determination, provide data to easily determine IC assignment based on MLST sequence type (ST) and intrinsic gene variants, discuss the history and current spread data of nine known ICs, IC1-IC9, and investigate the representation of ICs in public databases. MLST and cgMLST profiles, as well as OXA-51-like presence data are provided for all isolates available in GenBank. The possible emergence of a novel international clone, IC10, will be discussed.

摘要

是一种革兰氏阴性球杆菌,在不利环境中具有出色的生存技能,并且能够迅速获得抗生素耐药性,使其成为全球最成功的医院病原体之一,对公共卫生构成严重威胁。的全球传播由几个名为“高风险国际克隆株”(ICs)的谱系驱动,其中两个最早在20世纪70年代被发现。流行病学监测是控制这种病原体传播的关键工具,目前越来越多地涉及全基因组测序。然而,根据其基因组序列将特定的分离株归为某个IC并不总是直截了当的,需要研究人员具备一些计算技能,而文献中发现的定义有时存在争议。在本综述中,我们将重点关注适用于IC确定的分型工具,提供基于多位点序列分型(MLST)序列类型(ST)和内在基因变体轻松确定IC归属的数据,讨论九个已知IC(IC1 - IC9)的历史和当前传播数据,并研究公共数据库中IC的代表性。为GenBank中所有可用的分离株提供了MLST和核心基因组多位点序列分型(cgMLST)图谱以及OXA - 51样存在数据。还将讨论新型国际克隆株IC10可能出现的情况。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5043/10459012/64e7530b14d1/microorganisms-11-02115-g001.jpg

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