Sahin Nurettin, Watanabe Shin, Tani Akio
Egitim Fakultesi, Mugla Sitki Kocman University, Mugla, Turkey.
Tropical Biosphere Research Center, University of the Ryukyus, Okinawa, Japan.
Antonie Van Leeuwenhoek. 2025 Jan 28;118(3):50. doi: 10.1007/s10482-025-02062-3.
A Gram-stain-negative, rod-shaped, non-motile, aerobic, light-yellow-pigmented bacterium, designated as strain Y10, was isolated from Lumnitzera racemosa leaf in Iriomote island mangrove forests in Japan. The 16S rRNA gene sequence analysis revealed that the isolate Y10 was affiliated with the family Flavobacteriaceae, and the sequence showed the highest sequence identity to that of Neptunitalea chrysea NBRC 110019 (97.2%) and others with below 96% sequence identity. The draft genome analysis revealed that its genomic size is 3.85 Mbp with G + C content 34.1%. The average nucleotide identity, average amino acid identity, and digital DNA-DNA hybridization values between strain Y10 and Neptunitalea chrysea NBRC 110019 was 79.07%, 76.35% and 19.6%, respectively, which were below the thresholds for prokaryotic species delineation (95-96%, 85%, and 70%, respectively). MK-6 was the only menaquinone, and the major cellular fatty acids (> 10% of the total fatty acids) were iso-C, iso-C 3-OH, and summed feature 3 (comprised of Cω7c-iso and C 2-OH). Based on its distinct phylogenetic position and genotypic and phenotypic characteristics, the strain represents a novel species of the genus Neptunitalea, for which the name Neptunitalea lumnitzerae sp. nov. is proposed. The type strain is Y10 (= DSM 110280 = NBRC 115783).
从日本西表岛红树林的总状红树叶片中分离出一株革兰氏染色阴性、杆状、无运动性、需氧、产浅黄色色素的细菌,命名为Y10菌株。16S rRNA基因序列分析表明,分离株Y10属于黄杆菌科,其序列与金黄海王星菌NBRC 110019的序列一致性最高(97.2%),与其他菌株的序列一致性低于96%。基因组草图分析表明,其基因组大小为3.85 Mbp,G+C含量为34.1%。菌株Y10与金黄海王星菌NBRC 110019之间的平均核苷酸一致性、平均氨基酸一致性和数字DNA-DNA杂交值分别为79.07%、76.35%和19.6%,均低于原核生物物种界定的阈值(分别为95-96%、85%和70%)。MK-6是唯一的甲基萘醌,主要细胞脂肪酸(占总脂肪酸的>10%)为异-C、异-C 3-OH和总和特征3(由Cω7c-异和C 2-OH组成)。基于其独特的系统发育位置以及基因型和表型特征,该菌株代表了海王星菌属的一个新物种,为此提出新名称金黄海王星菌(Neptunitalea lumnitzerae sp. nov.)。模式菌株为Y10(=DSM 110280=NBRC 115783)。