CBS 18055菌株的染色体水平基因组组装与注释
Chromosome level genome assembly and annotation of CBS 18055 strain.
作者信息
Bennis Nicole Xanthe, Indudhar Hanji Harshitha, van den Broek Marcel, Daran Jean-Marc
机构信息
Department of Biotechnology, Delft University of Technology, Delft, the Netherlands.
出版信息
Microbiol Resour Announc. 2025 Mar 11;14(3):e0100524. doi: 10.1128/mra.01005-24. Epub 2025 Jan 29.
Abstract
Hanseniaspora species gained attention due to the ability of these species to ferment simple sugars and to actively contribute to the development of bouquet aromas in wine and cider fermentations. We present a chromosome-level assembly of an isolate of that would enhance its potential applications.
摘要
汉逊酵母属物种因其能够发酵单糖并积极促进葡萄酒和苹果酒发酵中香气的发展而受到关注。我们展示了一种该属分离株的染色体水平组装，这将增强其潜在应用。
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Microbiol Resour Announc. 2024 Feb 15;13(2):e0055023. doi: 10.1128/mra.00550-23. Epub 2023 Dec 22.
2
sp. nov., a Novel Apiculate Yeast Species From Patagonian Forests That Lacks the Typical Genomic Domestication Signatures for Fermentative Environments.新种，一种来自巴塔哥尼亚森林的新型具尖酵母物种，其缺乏发酵环境典型的基因组驯化特征。
Front Microbiol. 2021 Jul 21;12:679894. doi: 10.3389/fmicb.2021.679894. eCollection 2021.
3
sp. nov., an ascomycetous yeast isolated from Tibet.新种，一种从西藏分离出的子囊菌酵母。
Int J Syst Evol Microbiol. 2019 Jun;71(3). doi: 10.1099/ijsem.0.004741. Epub 2021 Mar 15.
4
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5
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