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用氧化锌纳米颗粒处理的盐胁迫番茄植株的转录组数据集

Transcriptome datasets of salt-stressed tomato plants treated with zinc oxide nanoparticles.

作者信息

Ahmed Mostafa, Tóth Zoltán, Marrez Diaa Attia, Rizk Roquia, Abdul-Hamid Donia, Decsi Kincső

机构信息

Festetics Doctoral School, Institute of Agronomy, Hungarian University of Agriculture and Life Sciences, Georgikon Campus, 8360 Keszthely, Hungary.

Department of Agricultural Biochemistry, Faculty of Agriculture, Cairo University, Giza 12613, Egypt.

出版信息

Data Brief. 2025 Jan 9;58:111282. doi: 10.1016/j.dib.2025.111282. eCollection 2025 Feb.

DOI:10.1016/j.dib.2025.111282
PMID:39895669
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11783048/
Abstract

Salinity diminishes agricultural productivity and quality, resulting in overall economic losses on a worldwide scale. Zinc oxide nanoparticles (ZnO-NPs) have been found to enhance plant physiological and metabolic processes, as well as increase overall resilience to abiotic stressors. A research study was undertaken to assess the effects of foliar application of chemically produced ZnO-NPs on tomato plants, both in the presence and absence of a NaCl stressor. The datasets were obtained through the utilization of the shallow mRNA sequencing technology. Six datasets from the SRA were uploaded to NCBI. The aforementioned datasets encompass the Transcriptome Shotgun Assembly (TSA), the contigs that underwent blasting, mapping, and annotation from the pre-processed datasets, and the count table derived from the quantification of RNA-seq reads. All the aforementioned data is encompassed under the Mendeley database. Moving forward, the utilization of databases will facilitate the examination of modifications in plant biochemical reactions at the level of gene expression.

摘要

盐度会降低农业生产力和质量,在全球范围内造成总体经济损失。已发现氧化锌纳米颗粒(ZnO-NPs)可增强植物的生理和代谢过程,并提高对非生物胁迫的整体恢复力。开展了一项研究,以评估叶面喷施化学合成的ZnO-NPs对番茄植株的影响,包括有和没有NaCl胁迫的情况。数据集是通过利用浅层mRNA测序技术获得的。来自SRA的六个数据集已上传至NCBI。上述数据集包括转录组鸟枪法测序(TSA)、来自预处理数据集经比对、定位和注释的重叠群,以及源自RNA-seq读数定量的计数表。上述所有数据都包含在Mendeley数据库中。展望未来,数据库的利用将有助于在基因表达水平上研究植物生化反应的变化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a69/11783048/f5cb658c8c66/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a69/11783048/fa2248e72145/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a69/11783048/9e813b291dce/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a69/11783048/ccf9a73d163c/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a69/11783048/60f3d16e136c/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a69/11783048/f5cb658c8c66/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a69/11783048/fa2248e72145/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a69/11783048/9e813b291dce/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a69/11783048/ccf9a73d163c/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a69/11783048/60f3d16e136c/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a69/11783048/f5cb658c8c66/gr5.jpg

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本文引用的文献

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Interventional Effect of Zinc Oxide Nanoparticles with L. Plants When Compensating Irrigation Using Saline Water.纳米氧化锌与植物乳杆菌在咸水补灌时的介入效应
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