Sawada Hiroyuki, Shinohara Hirosuke, Takashima Yusuke, Naito Ken, Satou Mamoru
Research Center of Genetic Resources, National Agriculture and Food Research Organization (NARO), 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.
Graduate School of Agriculture, Tokyo University of Agriculture, 1737 Funako, Atsugi, Kanagawa 243-0034, Japan.
Int J Syst Evol Microbiol. 2025 Feb;75(2). doi: 10.1099/ijsem.0.006575.
Phytopathogenic bacteria (MAFF 311311 and MAFF 311313) were isolated from sugarcane plants exhibiting leaf stripe symptoms associated with red stripe disease in Okinawa Prefecture, Japan. The strains were Gram-reaction-negative, aerobic, motile with one polar flagellum, rod-shaped and non-spore-forming. The genomic DNA G+C content was 69.0 mol%, and the major cellular fatty acids (>10 % of the total fatty acids) included summed feature 3 (C and/or C ), C and summed feature 8 (C and/or C ). Phylogenomic analyses using whole-genome sequences consistently placed these strains within the genus . However, their phylogenetic positions did not correspond to any known species within this genus. Comparative analyses, including average nucleotide identity and digital DNA-DNA hybridization with closely related species, yielded values below the thresholds for prokaryotic species delineation (95-96 and 70 %, respectively), with the highest values observed for ATCC 19882 (93.98 and 54.3 %, respectively). Phenotypic characteristics, cellular fatty acid composition and a repertoire of secretion systems and their effectors can differentiate these strains from their closest relatives. The phenotypic, chemotaxonomic and genotypic data obtained in this study indicate that MAFF 311311 and MAFF 311313 constitute a novel species within the genus , for which we propose the name sp. nov., with MAFF 311311 (=ICMP 25276) designated as the type strain.
植物病原细菌(MAFF 311311和MAFF 311313)从日本冲绳县表现出与红条病相关的叶条纹症状的甘蔗植株中分离得到。这些菌株革兰氏反应阴性,需氧,具一根极生鞭毛可运动,杆状,不产芽孢。基因组DNA的G+C含量为69.0摩尔%,主要细胞脂肪酸(占总脂肪酸的>10%)包括总和特征3(C 和/或C )、C 以及总和特征8(C 和/或C )。使用全基因组序列进行的系统基因组分析一致将这些菌株置于 属内。然而,它们的系统发育位置与该属内任何已知物种均不对应。包括平均核苷酸同一性以及与近缘物种的数字DNA-DNA杂交在内的比较分析得出的值低于原核生物物种界定的阈值(分别为95 - 96%和70%),与ATCC 19882相比观察到的最高值分别为93.98%和54.3%。表型特征、细胞脂肪酸组成以及分泌系统及其效应子的组成可以将这些菌株与其最亲近的亲缘种区分开来。本研究中获得的表型、化学分类学和基因型数据表明,MAFF 311311和MAFF 311313构成了 属内的一个新物种,我们为此提议命名为 sp. nov.,将MAFF 311311(=ICMP 25276)指定为模式菌株。