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基于一致性正则化和不确定性估计的组织病理学图像半监督分割

Semi-supervised tissue segmentation from histopathological images with consistency regularization and uncertainty estimation.

作者信息

Sudhamsh G V S, Girisha S, Rashmi R

机构信息

Department of Computer Science and Engineering, Manipal Institute of Technology Bengaluru, Manipal Academy of Higher Education, Manipal, India.

Department of Data Science and Computer Applications, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, India.

出版信息

Sci Rep. 2025 Feb 22;15(1):6506. doi: 10.1038/s41598-025-90221-x.

Abstract

Pathologists have depended on their visual experience to assess tissue structures in smear images, which was time-consuming, error-prone, and inconsistent. Deep learning, particularly Convolutional Neural Networks (CNNs), offers the ability to automate this procedure by recognizing patterns in tissue images. However, training these models necessitates huge amounts of labeled data, which can be difficult to come by due to the skill required for annotation and the unavailability of data, particularly for rare diseases. This work introduces a new semi-supervised method for tissue structure semantic segmentation in histopathological images. The study presents a CNN based teacher model that generates pseudo-labels to train a student model, aiming to overcome the drawbacks of conventional supervised learning approaches. Self-supervised training is used to improve the teacher model's performance on smaller datasets. Consistency regularization is integrated to efficiently train the student model on labeled data. Further, the study uses Monte Carlo dropout to estimate the uncertainty of proposed model. The proposed model demonstrated promising results by achieving an mIoU score of 0.64 on a public dataset, highlighting its potential to improve segmentation accuracy in histopathological image analysis.

摘要

病理学家一直依赖视觉经验来评估涂片图像中的组织结构,这既耗时、容易出错,又缺乏一致性。深度学习,尤其是卷积神经网络(CNN),能够通过识别组织图像中的模式来实现这一过程的自动化。然而,训练这些模型需要大量的标注数据,由于标注所需的技能以及数据的不可获取性,尤其是对于罕见疾病,获取这些数据可能很困难。这项工作引入了一种用于组织病理学图像中组织结构语义分割的新的半监督方法。该研究提出了一种基于CNN的教师模型,该模型生成伪标签来训练学生模型,旨在克服传统监督学习方法的缺点。自监督训练用于提高教师模型在较小数据集上的性能。一致性正则化被集成以在标注数据上高效地训练学生模型。此外,该研究使用蒙特卡洛随机失活来估计所提出模型的不确定性。所提出的模型在一个公共数据集上实现了0.64的平均交并比得分,展示了有前景的结果,突出了其在提高组织病理学图像分析中分割准确性方面的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/04d4/11846888/b3011a4dba7a/41598_2025_90221_Fig1_HTML.jpg

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