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用于鉴定核糖体异质性的高通量方法。

High-throughput approaches for the identification of ribosome heterogeneity.

作者信息

Kyei-Baffour Edwin S, Lin Qi Chang, Alkan Ferhat, Faller William J

机构信息

Division of Oncogenomics, The Netherlands Cancer Institute, Amsterdam 1066CX, The Netherlands.

Department of Neurology and Neurosurgery, University Medical Center Utrecht Brain Center, Utrecht University, Utrecht, The Netherlands.

出版信息

Philos Trans R Soc Lond B Biol Sci. 2025 Mar 6;380(1921):20230381. doi: 10.1098/rstb.2023.0381.

Abstract

Recent advances in the fields of RNA translation and ribosome biology have demonstrated the heterogeneous nature of ribosomes. This manifests not only across different cellular contexts but also within the same cell. Such variations in ribosomal composition, be it in ribosomal RNAs or proteins, can significantly influence cellular processes and responses by altering the mRNAs being translated or the dynamics of ribosomes during the translation process. Therefore, identifying this heterogeneity is crucial for unravelling the complexity of gene expression across different fields of biology. Here we provide an overview of recent advances in high-throughput techniques for identifying ribosomal heterogeneity. We cover methodologies for probing both rRNA and protein components of the ribosome and encompass the most recent next-generation sequencing and computational analyses, as well as a diverse array of mass spectrometry techniques.This article is part of the discussion meeting issue 'Ribosome diversity and its impact on protein synthesis, development and disease'.

摘要

RNA翻译和核糖体生物学领域的最新进展已证明核糖体具有异质性。这不仅体现在不同的细胞环境中,也体现在同一细胞内。核糖体组成的这种变化,无论是核糖体RNA还是蛋白质方面的变化,都可以通过改变正在翻译的mRNA或翻译过程中核糖体的动态变化,显著影响细胞过程和反应。因此,识别这种异质性对于揭示生物学不同领域中基因表达的复杂性至关重要。在此,我们概述了用于识别核糖体异质性的高通量技术的最新进展。我们涵盖了探测核糖体rRNA和蛋白质成分的方法,包括最新的下一代测序和计算分析,以及各种各样的质谱技术。本文是“核糖体多样性及其对蛋白质合成、发育和疾病的影响”讨论会议文集的一部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3905/11883430/6c812f7b24cf/rstb.2023.0381.f001.jpg

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