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利用序列相似性网络挖掘具有卓越热稳定性的新型聚对苯二甲酸乙二酯酶的嗜热菌基因组。

Mining Thermophile Genomes for New PETases with Exceptional Thermostabilities Using Sequence Similarity Networks.

作者信息

Hu Zhenyu, Klupt Kody, Zechel David L, Jia Zongchao, Howe Graeme

机构信息

Department of Chemistry, Queen's University, Kingston, ON, Canada.

Department of Biomedical and Molecular Sciences, Queen's University, Kingston, ON, Canada.

出版信息

Chembiochem. 2025 Jun 16;26(12):e202500065. doi: 10.1002/cbic.202500065. Epub 2025 Apr 7.

DOI:10.1002/cbic.202500065
PMID:40069109
Abstract

Enzymatic hydrolysis of polyethylene terephthalate (PET) is a promising technology for advancing a circular PET economy. Several PET-degrading α/β hydrolases have been identified, but the full potential of this enzyme family to catalyze PET hydrolysis remains largely unexplored. To address this, sequence similarity networks are employed to investigate the α/β hydrolase fold-5 subfamily (IPR029059) for new PETases. Priority is given to sequences from thermophiles, as thermostable enzymes are likely more suitable for industrial applications. Ten enzymes with ≈20% sequence identity to the well-known LCC-PETase are identified, and seven are successfully overexpressed and purified for in vitro characterization. Each enzyme catalyzes the hydrolysis of p-nitrophenyl butyrate, a mimic of trimeric PET, and emulsified PET nanoparticles. Notably, three enzymes are also capable of hydrolyzing PET films. Novel PETases exhibit melting temperatures (T) exceeding 55 °C and only modest losses of activity after incubation at 70 °C for 24 h. The crystal structure of AroC (T = 85 °C) is resolved to 2.2 Å, revealing several salt bridges that likely confer thermostability, and a unique loop that is conserved among the PETases described here. These novel enzymes will enable engineering campaigns to generate thermostable and catalytically efficient PETases for use as industrial biocatalysts.

摘要

聚对苯二甲酸乙二酯(PET)的酶促水解是推动PET循环经济发展的一项很有前景的技术。已经鉴定出几种可降解PET的α/β水解酶,但该酶家族催化PET水解的全部潜力在很大程度上仍未得到探索。为了解决这个问题,利用序列相似性网络来研究α/β水解酶折叠-5亚家族(IPR029059)以寻找新的PET酶。优先考虑嗜热菌的序列,因为热稳定酶可能更适合工业应用。鉴定出了10种与著名的LCC-PET酶具有约20%序列同一性的酶,其中7种成功实现了过表达并纯化用于体外表征。每种酶都能催化对硝基苯基丁酸酯(三聚体PET的模拟物)和乳化PET纳米颗粒的水解。值得注意的是,有三种酶也能够水解PET薄膜。新型PET酶的解链温度(T)超过55°C,在70°C孵育24小时后活性仅适度损失。AroC(T = 85°C)的晶体结构解析至2.2 Å,揭示了几个可能赋予热稳定性的盐桥,以及在此处描述的PET酶中保守的一个独特环。这些新型酶将有助于开展工程研究,以产生热稳定且催化效率高的PET酶用作工业生物催化剂。

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本文引用的文献

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Landscape profiling of PET depolymerases using a natural sequence cluster framework.使用自然序列簇框架对PET解聚酶进行景观分析。
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Global marine microbial diversity and its potential in bioprospecting.全球海洋微生物多样性及其在生物勘探中的潜力。
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Assessment of Four Engineered PET Degrading Enzymes Considering Large-Scale Industrial Applications.考虑大规模工业应用的四种工程化聚对苯二甲酸乙二酯降解酶的评估
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Rapid depolymerization of poly(ethylene terephthalate) thin films by a dual-enzyme system and its impact on material properties.双酶系统对聚对苯二甲酸乙二酯薄膜的快速解聚及其对材料性能的影响
Chem Catal. 2022 Dec 15;2(12):3573-3589. doi: 10.1016/j.checat.2022.11.004.
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Structure and function of the metagenomic plastic-degrading polyester hydrolase PHL7 bound to its product.与产物结合的宏基因组可降解聚酯水解酶 PHL7 的结构与功能
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Thermophilic Carboxylesterases from Hydrothermal Vents of the Volcanic Island of Ischia Active on Synthetic and Biobased Polymers and Mycotoxins.来自火山岛伊斯基亚热液喷口的嗜热羧酸酯酶对合成和生物基聚合物及真菌毒素有活性。
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Machine learning-aided engineering of hydrolases for PET depolymerization.基于机器学习的 PET 解聚用水解酶工程。
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