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大规模全基因组CRISPR筛选显示,PRC1是肾透明细胞癌中的一个肿瘤必需候选基因。

Large-scale genomic-wide CRISPR screening revealed PRC1 as a tumor essential candidate in clear cell renal cell carcinoma.

作者信息

Li Baochao, Pan Yongsheng, Wu Jiajin, Miao Chenkui, Wang Zengjun

机构信息

Department of Urology, First Affiliated Hospital of Nanjing Medical University, No. 300, Guangzhou Street, Nanjing, Jiangsu Province 210029, China.

出版信息

Int J Med Sci. 2025 Mar 3;22(7):1658-1671. doi: 10.7150/ijms.107691. eCollection 2025.

Abstract

: Clear cell renal cell carcinoma (ccRCC) is a prevalent and aggressive subtype of kidney cancer, often associated with metastasis and recurrence. Identifying key genes involved in ccRCC progression is critical for improving treatment strategies and patient outcomes. : We performed a large-scale genome-wide CRISPR screening to identify genes crucial to ccRCC progression using the DepMap database. For discovery and validation, we integrated multi-omics data from The Cancer Genome Atlas (TCGA), GEO, and the NJMU-ccRCC clinical cohort. Bioinformatics analyses, including differential expression, pathway enrichment, and protein-protein interaction network analysis, were conducted to elucidate the biological functions. To validate our findings, we employed immunohistochemistry, qRT-PCR, and various cellular assays to investigate the role of PRC1 in ccRCC. : CRISPR screening identified PRC1 as a key gene significantly overexpressed in ccRCC tissues from the DepMap database. Elevated PRC1 expression was associated with poor overall survival, disease-specific survival, and progression-free interval. Silencing PRC1 in ccRCC cell lines inhibited cell proliferation, migration, and colony formation. Functional enrichment analyses revealed that PRC1 is involved in essential processes such as cell cycle regulation, mitosis, and cytokinesis. Additionally, PRC1 expression was correlated with the activation of the Wnt/β-catenin pathway, suggesting that PRC1 plays a pivotal role in tumor progression. : PRC1 emerges as a promising biomarker and therapeutic target for ccRCC. Elevated PRC1 expression is associated with poor prognosis, and its inhibition suppresses ccRCC cell proliferation and migration. Our findings underscore the crucial role of PRC1 in ccRCC progression and highlight the need for further investigation into its molecular mechanisms and therapeutic potential.

摘要

透明细胞肾细胞癌(ccRCC)是一种常见且侵袭性强的肾癌亚型,常与转移和复发相关。确定参与ccRCC进展的关键基因对于改善治疗策略和患者预后至关重要。

我们使用DepMap数据库进行了大规模全基因组CRISPR筛选,以确定对ccRCC进展至关重要的基因。为了进行发现和验证,我们整合了来自癌症基因组图谱(TCGA)、基因表达综合数据库(GEO)和南京医科大学附属第一医院ccRCC临床队列的多组学数据。进行了生物信息学分析,包括差异表达、通路富集和蛋白质-蛋白质相互作用网络分析,以阐明其生物学功能。为了验证我们的发现,我们采用免疫组织化学、qRT-PCR和各种细胞实验来研究PRC1在ccRCC中的作用。

CRISPR筛选确定PRC1是DepMap数据库中在ccRCC组织中显著过表达的关键基因。PRC1表达升高与总生存期、疾病特异性生存期和无进展生存期较差相关。在ccRCC细胞系中沉默PRC1可抑制细胞增殖、迁移和集落形成。功能富集分析表明,PRC1参与细胞周期调控、有丝分裂和胞质分裂等重要过程。此外,PRC1表达与Wnt/β-连环蛋白通路的激活相关,表明PRC1在肿瘤进展中起关键作用。

PRC1成为ccRCC有前景的生物标志物和治疗靶点。PRC1表达升高与预后不良相关,抑制PRC1可抑制ccRCC细胞增殖和迁移。我们的发现强调了PRC1在ccRCC进展中的关键作用,并突出了进一步研究其分子机制和治疗潜力的必要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c75/11905274/0bafdfabcd39/ijmsv22p1658g001.jpg

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