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使用高通量筛选技术和多重基因组编辑鉴定sgRNA突变体的方案

Protocol for identification of sgRNA mutants using high-throughput screening technique and multiplex genome editing.

作者信息

Liang Zeyu, Wu Xin, Ye Zhaojin, She Lingwei, Ma Xiaoyan, Huo Yi-Xin

机构信息

Key Laboratory of Molecular Medicine and Biotherapy, Aerospace Center Hospital, School of Life Science, Beijing Institute of Technology, Beijing 100081, China.

Key Laboratory of Molecular Medicine and Biotherapy, Aerospace Center Hospital, School of Life Science, Beijing Institute of Technology, Beijing 100081, China; Center for Future Foods, Muyuan Laboratory, 110 Shangding Road, Zhengzhou, Henan Province 450016, China; Beijing Institute of Technology (Tangshan) Translational Research Center, Hebei 063611, China.

出版信息

STAR Protoc. 2025 Mar 21;6(2):103690. doi: 10.1016/j.xpro.2025.103690.

DOI:10.1016/j.xpro.2025.103690
PMID:40120111
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11981739/
Abstract

In the CRISPR-Cas9 system, tandem expression of multiple identical single-guide RNAs (sgRNAs) often triggers homologous sequences loss, which affects multiplex genome editing efficiencies. Here, we present a protocol for high-throughput screening of functional sgRNAs with nonrepetitive mutants. We describe steps for constructing the screening platform, designing and constructing sgRNA libraries, and screening sgRNA mutants. These mutants can interact with the Cas9 protein, enabling multiplex genome editing. For complete details on the use and execution of this protocol, please refer to Liang et al..

摘要

在CRISPR-Cas9系统中,多个相同的单向导RNA(sgRNA)串联表达常常会引发同源序列丢失,这会影响多重基因组编辑效率。在此,我们展示了一种用于高通量筛选具有非重复突变体的功能性sgRNA的方案。我们描述了构建筛选平台、设计和构建sgRNA文库以及筛选sgRNA突变体的步骤。这些突变体可与Cas9蛋白相互作用,实现多重基因组编辑。有关此方案使用和执行的完整详细信息,请参阅Liang等人的文章。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d7f/11981739/832674cd6a26/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d7f/11981739/56916783f2c7/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d7f/11981739/2ba66bb87fe8/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d7f/11981739/94ae5949e305/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d7f/11981739/d1ea83b1528c/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d7f/11981739/c4438442a638/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d7f/11981739/832674cd6a26/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d7f/11981739/56916783f2c7/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d7f/11981739/2ba66bb87fe8/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d7f/11981739/94ae5949e305/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d7f/11981739/d1ea83b1528c/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d7f/11981739/c4438442a638/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d7f/11981739/832674cd6a26/gr5.jpg

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本文引用的文献

1
Identification of functional sgRNA mutants lacking canonical secondary structure using high-throughput FACS screening.使用高通量 FAC 筛选鉴定缺乏典型二级结构的功能性 sgRNA 突变体。
Cell Rep. 2024 Jun 25;43(6):114290. doi: 10.1016/j.celrep.2024.114290. Epub 2024 May 31.
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High-Complexity One-Pot Golden Gate Assembly.高通量一步法 Golden Gate 组装。
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CRISPRi-mediated tunable control of gene expression level with engineered single-guide RNA in Escherichia coli.
CRISPRi 介导的工程化单指导 RNA 调控大肠杆菌中基因表达水平
Nucleic Acids Res. 2023 May 22;51(9):4650-4659. doi: 10.1093/nar/gkad234.
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Efficient long fragment editing technique enables large-scale and scarless bacterial genome engineering.高效长片段编辑技术可实现大规模无痕细菌基因组工程。
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Simultaneous repression of multiple bacterial genes using nonrepetitive extra-long sgRNA arrays.利用非重复的超长 sgRNA 阵列同时抑制多个细菌基因。
Nat Biotechnol. 2019 Nov;37(11):1294-1301. doi: 10.1038/s41587-019-0286-9. Epub 2019 Oct 7.
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CRISPR-Cas9-assisted native end-joining editing offers a simple strategy for efficient genetic engineering in Escherichia coli.CRISPR-Cas9 辅助的同源末端连接编辑为大肠杆菌的高效基因工程提供了一种简单的策略。
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In vivo genome editing rescues photoreceptor degeneration via a Cas9/RecA-mediated homology-directed repair pathway.体内基因组编辑通过 Cas9/RecA 介导的同源定向修复途径挽救光感受器变性。
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Comprehensive Profiling of Four Base Overhang Ligation Fidelity by T4 DNA Ligase and Application to DNA Assembly.T4 DNA连接酶对四种碱基突出端连接保真度的全面分析及其在DNA组装中的应用
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CRISPR-Cas12a-Assisted Recombineering in Bacteria.细菌中CRISPR-Cas12a辅助的重组工程
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