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靶向芳香族氨基酸残基的肽和蛋白质的位点选择性切割。

Site-selective cleavage of peptides and proteins targeting aromatic amino acid residues.

作者信息

Bandyopadhyay Ayan, Sarkar Rajib

机构信息

Department of Chemistry, Chapra Government College Nadia-741123 West Bengal India.

Department of Higher Education, Government of West Bengal India

出版信息

RSC Adv. 2025 Mar 25;15(12):9159-9179. doi: 10.1039/d4ra08956a. eCollection 2025 Mar 21.

Abstract

The site-selective cleavage of peptides and proteins at specific amino acid residues is an important strategy for the modification of biomolecules as it can potentially transmute the reactivity profile of the whole molecule. Moreover, precise cleavage of a specific amide bond in peptides and proteins has enormous applications in the domains of chemical biology, genetics, and protein engineering. Among the 20 proteinogenic amino acids, tryptophan (Trp, W), tyrosine (Tyr, Y), phenylalanine (Phe, F) and histidine (His, H) are classified as aromatic amino acids that maintain the function of protein folding through hydrophobic and π-π interactions. Thus, scissoring at a specific site of an aromatic amino acid may alter the structure and function of a peptide or protein. In the last 60-70 years, great success has been achieved in the development of methods for the aromatic amino acid (AAA)-selective cleavage of peptides and proteins. Generally, aromatic side chains are derivatized in the presence of specific reagents. Consequently, either the downstream or the upstream amide bond of the aromatic side chain is activated, and hydrolysis of the amide bond splits the peptide. Unfortunately, a systematic review covering this methodological development of the AAA-selective fission of peptide is lacking to date. Thus, in this review, we aim to showcase the up-to-date progress in the site-selective rupture of peptide bonds at aromatic amino acid residues with an emphasis on the postulated mechanisms, enabling future researchers to further drive progress in this research field.

摘要

在特定氨基酸残基处对肽和蛋白质进行位点选择性切割是修饰生物分子的重要策略,因为它有可能改变整个分子的反应活性。此外,在肽和蛋白质中精确切割特定的酰胺键在化学生物学、遗传学和蛋白质工程领域有广泛应用。在20种蛋白质ogenic氨基酸中,色氨酸(Trp,W)、酪氨酸(Tyr,Y)、苯丙氨酸(Phe,F)和组氨酸(His,H)被归类为芳香族氨基酸,它们通过疏水和π-π相互作用维持蛋白质折叠的功能。因此,在芳香族氨基酸的特定位点进行切割可能会改变肽或蛋白质的结构和功能。在过去的60到70年里,在开发肽和蛋白质的芳香族氨基酸(AAA)选择性切割方法方面取得了巨大成功。一般来说,芳香族侧链在特定试剂存在下进行衍生化。因此,芳香族侧链的下游或上游酰胺键被激活,酰胺键的水解使肽断裂。不幸的是,迄今为止缺乏对肽的AAA选择性裂解这一方法学发展的系统综述。因此,在本综述中,我们旨在展示在芳香族氨基酸残基处肽键位点选择性断裂的最新进展,重点是推测的机制,使未来的研究人员能够在该研究领域进一步推动进展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f44d/11934106/bf489256e789/d4ra08956a-f1.jpg

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