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使用3D Slicer和Ultimaker Cura将DICOM文件转换为STL模型的协议。

Protocol for Converting DICOM Files to STL Models Using 3D Slicer and Ultimaker Cura.

作者信息

Pérez-Sevilla Malena, Rivas-Navazo Fernando, Latorre-Carmona Pedro, Fernández-Zoppino Darío

机构信息

Department of Digitalization, Universidad de Burgos, Avda. Cantabria sn, 09006 Burgos, Spain.

Department of Electromechanical Engineering, Universidad de Burgos, Avda. Cantabria sn, 09006 Burgos, Spain.

出版信息

J Pers Med. 2025 Mar 19;15(3):118. doi: 10.3390/jpm15030118.

Abstract

: 3D printing has become an invaluable tool in medicine, enabling the creation of precise anatomical models for surgical planning and medical education. This study presents a comprehensive protocol for converting DICOM files into three-dimensional models and their subsequent transformation into GCODE files ready for 3D printing. : We employed the open-source software "3D Slicer" for the initial conversion of the DICOM files, capitalising on its robust capabilities in segmentation and medical image processing. An optimised workflow was developed for the precise and efficient conversion of medical images into STL models, ensuring high fidelity in anatomical structures. The protocol was validated through three case studies, achieving elevated structural fidelity based on deviation analysis between the STL models and the original DICOM data. Furthermore, the segmentation process preserved morphological accuracy within a narrow deviation range, ensuring the reliable replication of anatomical features for medical applications. Our protocol provides an effective and accessible approach to generating 3D anatomical models with enhanced accuracy and reproducibility. In later stages, we utilised the "Ultimaker Cura" software to generate customised GCODE files tailored to the specifications of the 3D printer. : Our protocol offers an effective, accessible, and more accurate solution for creating 3D anatomical models from DICOM images. Furthermore, the versatility of this approach allows for its adaptation to various 3D printers and materials, expanding its utility in the medical and scientific community. : This study presents a robust and reproducible approach for converting medical data into physical three-dimensional objects, paving the way for a wide range of applications in personalised medicine and advanced clinical practice. The selection of sample datasets from the 3D Slicer repository ensures standardisation and reproducibility, allowing for independent validation of the proposed workflow without ethical or logistical constraints related to patient data access. However, we acknowledge that future work could expand upon this by incorporating real patient datasets and benchmarking the protocol against alternative segmentation methods and software packages to further assess performance across different clinical scenarios. Essentially, this protocol can be particularly characterised by its commitment to open-source software and low-cost solutions, making advanced 3D modelling accessible to a wider audience. By leveraging open-access tools such as "3D Slicer" and "Ultimaker Cura", we democratise the creation of anatomical models, ensuring that institutions with limited resources can also benefit from this technology, promoting innovation and inclusivity in medical sciences and education.

摘要

3D打印已成为医学中一项极具价值的工具,能够创建精确的解剖模型用于手术规划和医学教育。本研究提出了一个全面的方案,用于将DICOM文件转换为三维模型,并随后将其转换为可供3D打印的GCODE文件。我们使用开源软件“3D Slicer”对DICOM文件进行初始转换,利用其在分割和医学图像处理方面的强大功能。开发了一种优化的工作流程,用于将医学图像精确高效地转换为STL模型,确保解剖结构的高保真度。该方案通过三个案例研究进行了验证,基于STL模型与原始DICOM数据之间的偏差分析,实现了更高的结构保真度。此外,分割过程在狭窄的偏差范围内保持了形态学准确性,确保了医学应用中解剖特征的可靠复制。我们的方案提供了一种有效且易于使用的方法来生成具有更高准确性和可重复性的3D解剖模型。在后期阶段,我们使用“Ultimaker Cura”软件生成符合3D打印机规格的定制GCODE文件。我们的方案为从DICOM图像创建3D解剖模型提供了一种有效、易于使用且更准确的解决方案。此外,这种方法的通用性使其能够适应各种3D打印机和材料,扩大了其在医学和科学界的应用。本研究提出了一种强大且可重复的方法,用于将医学数据转换为物理三维物体,为个性化医疗和先进临床实践中的广泛应用铺平了道路。从3D Slicer存储库中选择样本数据集可确保标准化和可重复性,允许在不受与患者数据访问相关的伦理或后勤限制的情况下对所提出的工作流程进行独立验证。然而,我们承认未来的工作可以在此基础上进行扩展,纳入真实患者数据集,并将该方案与其他分割方法和软件包进行基准测试,以进一步评估不同临床场景下的性能。本质上,该方案的特点尤其在于其对开源软件和低成本解决方案的坚持,使先进的3D建模能够为更广泛的受众所用。通过利用“3D Slicer”和“Ultimaker Cura”等开放获取工具,我们使解剖模型的创建民主化,确保资源有限的机构也能从这项技术中受益,促进医学科学和教育中的创新与包容性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0634/11943244/211c9e0e65a0/jpm-15-00118-g002.jpg

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