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用于癌症生存预测的多模态多实例证据融合神经网络

Multimodal multi-instance evidence fusion neural networks for cancer survival prediction.

作者信息

Luo Hui, Huang Jiashuang, Ju Hengrong, Zhou Tianyi, Ding Weiping

机构信息

Faculty of Data Science, City University of Macau, Macau, 999078, China.

School of Information and Management, Guangxi Medical University, Nanning, 530021, China.

出版信息

Sci Rep. 2025 Mar 26;15(1):10470. doi: 10.1038/s41598-025-93770-3.

DOI:10.1038/s41598-025-93770-3
PMID:40140434
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11947308/
Abstract

Accurate cancer survival prediction plays a crucial role in assisting clinicians in formulating treatment plans. Multimodal data, such as histopathological images, genomic data, and clinical information, provide complementary and comprehensive information, significantly enhancing the accuracy of this task. However, existing methods, despite achieving some promising results, still exhibit two significant limitations: they fail to effectively utilize global context and overlook the uncertainty of different modalities, which may lead to unreliable predictions. In this study, we propose a multimodal multi-instance evidence fusion neural network for cancer survival prediction, called M2EF-NNs. Specifically, to better capture global information from images, we employ a pre-trained vision transformer model to extract patch feature embeddings from histopathological images. Additionally, we are the first to apply the Dempster-Shafer evidence theory to the cancer survival prediction task and introduce subjective logic to estimate the uncertainty of different modalities. We then dynamically adjust the weights of the class probability distribution after multimodal fusion based on the estimated evidence from the fused multimodal data to achieve trusted survival prediction. Finally, the experimental results on three cancer datasets demonstrate that our method significantly improves cancer survival prediction regarding overall C-index and AUC, thereby validating the model's reliability.

摘要

准确的癌症生存预测在协助临床医生制定治疗方案方面起着至关重要的作用。多模态数据,如组织病理学图像、基因组数据和临床信息,提供了互补且全面的信息,显著提高了这项任务的准确性。然而,现有方法尽管取得了一些有前景的结果,但仍存在两个显著局限性:它们未能有效利用全局上下文,并且忽略了不同模态的不确定性,这可能导致不可靠的预测。在本研究中,我们提出了一种用于癌症生存预测的多模态多实例证据融合神经网络,称为M2EF-NNs。具体而言,为了更好地从图像中捕捉全局信息,我们使用预训练的视觉Transformer模型从组织病理学图像中提取补丁特征嵌入。此外,我们首次将Dempster-Shafer证据理论应用于癌症生存预测任务,并引入主观逻辑来估计不同模态的不确定性。然后,我们根据融合后的多模态数据估计的证据,在多模态融合后动态调整类概率分布的权重,以实现可靠的生存预测。最后,在三个癌症数据集上的实验结果表明,我们的方法在总体C指数和AUC方面显著提高了癌症生存预测,从而验证了模型的可靠性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da9d/11947308/301d5dcc2227/41598_2025_93770_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da9d/11947308/557707c08151/41598_2025_93770_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da9d/11947308/32d4856cda30/41598_2025_93770_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da9d/11947308/6e7358c6023b/41598_2025_93770_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da9d/11947308/10267485e1cd/41598_2025_93770_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da9d/11947308/c194ee46d735/41598_2025_93770_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da9d/11947308/301d5dcc2227/41598_2025_93770_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da9d/11947308/557707c08151/41598_2025_93770_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da9d/11947308/32d4856cda30/41598_2025_93770_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da9d/11947308/6e7358c6023b/41598_2025_93770_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da9d/11947308/10267485e1cd/41598_2025_93770_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da9d/11947308/c194ee46d735/41598_2025_93770_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/da9d/11947308/301d5dcc2227/41598_2025_93770_Fig6_HTML.jpg

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本文引用的文献

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Nuclei instance segmentation using a transformer-based graph convolutional network and contextual information augmentation.使用基于Transformer的图卷积网络和上下文信息增强的细胞核实例分割
Comput Biol Med. 2023 Oct 25;167:107622. doi: 10.1016/j.compbiomed.2023.107622.
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MIF: Multi-Shot Interactive Fusion Model for Cancer Survival Prediction Using Pathological Image and Genomic Data.MIF:使用病理图像和基因组数据进行癌症生存预测的多镜头交互式融合模型
IEEE J Biomed Health Inform. 2025 May;29(5):3247-3258. doi: 10.1109/JBHI.2024.3363161. Epub 2025 May 6.
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Cross-Scale Fusion Transformer for Histopathological Image Classification.
用于组织病理学图像分类的跨尺度融合Transformer
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Bioinformatics. 2023 Jan 1;39(1). doi: 10.1093/bioinformatics/btad025.
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TransSurv: Transformer-Based Survival Analysis Model Integrating Histopathological Images and Genomic Data for Colorectal Cancer.TransSurv:一种基于 Transformer 的生存分析模型,整合了结直肠癌的组织病理学图像和基因组数据。
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