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栽培花生中MATE基因家族的全基因组剖析及其在铝胁迫下的表达谱揭示

Genome-Wide Dissection of MATE Gene Family in Cultivated Peanuts and Unveiling Their Expression Profiles Under Aluminum Stress.

作者信息

Hameed Saba, Li Xia, Zhou Yunyi, Zhan Jie, Wang Aiqin, Han Zhuqiang, Xiao Dong, He Longfei

机构信息

National Demonstration Center for Experimental Plant Science Education, College of Agriculture, Guangxi University, Nanning 530004, China.

Guangxi Key Laboratory for Agro-Environment and Agro-Product Safety, Nanning 530004, China.

出版信息

Int J Mol Sci. 2025 Mar 17;26(6):2707. doi: 10.3390/ijms26062707.

Abstract

Peanut faces yield constraints due to aluminum (Al) toxicity in acidic soils. The multidrug and toxic compound extrusion (MATE) family is known for extruding organic compounds and transporting plant hormones and secondary metabolites. However, the MATE transporter family has not yet been reported in peanuts under the Al stress condition. In this genome-wide study, we identified 111 genes encoding MATE proteins from the cultivated peanut genome via structural analysis, designated as -. Encoded proteins ranged from 258 to 582 aa residues. Based on their phylogenetic relationship and gene structure, they were classified into six distinct groups. Genes were distributed unevenly on twenty peanut chromosomes. Chr-05 exhibited the higher density of 12%, while chr-02 and chr-11 have the lowest 1% of these loci. Peanut MATE genes underwent a periodic strong to moderate purifying selection pressure during evolution, exhibiting both tandem and segmental duplication events. Segmental duplication accounted for 82% of the events, whereas tandem duplication represented 18%, with both events predominantly driving their moderate expansion. Further investigation of seven genes expression profiles in peanut root tips resulted in distinct transcriptional responses at 4, 8, 12, and 24 h post-Al treatment. Notably, genes exhibited greater transcriptional changes in the Al-tolerant cultivar 99-1507 compared to the Al-sensitive cultivar ZH2 (Zhonghua No.2). Our findings provide the first comprehensive genome-wide analysis of the MATE family in cultivated peanuts, highlighting their potential roles in response to Al stress.

摘要

由于酸性土壤中的铝(Al)毒性,花生面临产量限制。多药和有毒化合物外排(MATE)家族以排出有机化合物以及转运植物激素和次生代谢产物而闻名。然而,在铝胁迫条件下,花生中尚未报道过MATE转运蛋白家族。在这项全基因组研究中,我们通过结构分析从栽培花生基因组中鉴定出111个编码MATE蛋白的基因,命名为-。编码的蛋白质长度为258至582个氨基酸残基。根据它们的系统发育关系和基因结构,它们被分为六个不同的组。基因在20条花生染色体上分布不均。第5号染色体上的基因密度最高,为12%,而第2号和第11号染色体上的这些基因座密度最低,为1%。花生MATE基因在进化过程中经历了周期性的从强到中度的纯化选择压力,表现出串联和片段重复事件。片段重复占这些事件的82%,而串联重复占18%,这两种事件主要推动了它们的适度扩张。对花生根尖中7个基因表达谱的进一步研究表明,在铝处理后4、8、12和24小时出现了明显的转录反应。值得注意的是,与铝敏感品种ZH2(中花2号)相比,耐铝品种99-1507中的基因表现出更大的转录变化。我们的研究结果首次对栽培花生中的MATE家族进行了全面的全基因组分析,突出了它们在应对铝胁迫中的潜在作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9246/11942301/a9011b673ad4/ijms-26-02707-g001.jpg

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