Li Jialing, Sun Weimin, Cao Yingjie, Wu Jiaxue, Duan Li, Zhang Miaomiao, Luo Xiaoqing, Deng Qiqi, Peng Ziqi, Mou Xiaozhen, Li Wenjun, Wang Pandeng
State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Stress Biology, School of Environmental Science and Engineering, School of Life Sciences, School of Ecology, Sun Yat-Sen University, Guangzhou, Guangdong, 510275, China.
Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, 511458, China.
Microbiome. 2025 Apr 1;13(1):89. doi: 10.1186/s40168-025-02076-z.
Lignin, as the most abundant recalcitrant organic carbon in terrestrial ecosystems, plays a crucial role in the Earth's carbon cycle. After lignin entering aquatic environments, portion of it tends to accumulate in sediments, forming a stable carbon relatively reservoir. However, the increasing temperature caused by human activities may impact microbial-mediated lignin decomposition, thereby affecting sedimentary carbon reservoirs. Therefore, revealing how temperature affects microbial-mediated lignin decomposition in river sediment, a topic that remains elusive, is essential for comprehending the feedbacks between river carbon reservoirs and climate. To address this, we conducted stable isotope probing of river surface sediment using C-lignin and C-vanillin, and utilized a series of techniques, including CO production analysis, 16S rRNA gene amplicon sequencing, metagenomics, and metatranscriptomics, to identify the lignin-decomposing microbes and the effects of temperature on microbial-mediated lignin decomposition.
We found that elevated temperatures not only increased the total sediment respiration (total CO) and the CO emissions from lignin/vanillin decomposition, but also enhanced priming effects. The C-labled taxa, including Burkholderiales, Sphingomonadales, and Pseudomonadales, were identified as the main potential lignin/vanillin decomposers, and their abundances and activity significantly increased as temperature increased. Furthermore, we observed that increasing temperature significantly increased the activity of lignin decomposing pathways, including β-aryl ether fragments and 4,5-PDOG pathway. Additionally, as temperature increases, the transcriptional abundances of other carbon cycling related genes, such as pulA (starch decomposition) and xyla (hemicellulose decomposition), also exhibited increasing trends. Overall, our study elucidated the potential lignin-decomposing microbes and pathways in river sediment and their responses to temperature increasing.
Our study demonstrated that the temperature increasing can increase the rate of lignin/vanillin decomposition via affecting the activity of lignin-decomposing microbes. This finding indicates that the ongoing intensification of global warming may enhance the decomposition of recalcitrant organic carbon in river sediment, thereby impacting global carbon cycling. Video Abstract.
木质素是陆地生态系统中最丰富的难降解有机碳,在地球碳循环中起着关键作用。木质素进入水生环境后,部分会在沉积物中积累,形成一个相对稳定的碳库。然而,人类活动导致的气温上升可能会影响微生物介导的木质素分解,进而影响沉积碳库。因此,揭示温度如何影响河流沉积物中微生物介导的木质素分解这一仍不明确的课题,对于理解河流碳库与气候之间的反馈至关重要。为解决这一问题,我们使用C-木质素和C-香草醛对河流表层沉积物进行了稳定同位素探测,并利用了一系列技术,包括CO产生分析、16S rRNA基因扩增子测序、宏基因组学和宏转录组学,来鉴定木质素分解微生物以及温度对微生物介导的木质素分解的影响。
我们发现温度升高不仅增加了沉积物总呼吸量(总CO)以及木质素/香草醛分解产生的CO排放量,还增强了激发效应。被C标记的分类群,包括伯克霍尔德氏菌目、鞘脂单胞菌目和假单胞菌目,被确定为主要的潜在木质素/香草醛分解者,它们的丰度和活性随着温度升高而显著增加。此外,我们观察到温度升高显著增加了木质素分解途径的活性,包括β-芳基醚片段和4,5-PDOG途径。另外,随着温度升高,其他与碳循环相关基因的转录丰度,如pulA(淀粉分解)和xyla(半纤维素分解),也呈现出增加趋势。总体而言,我们的研究阐明了河流沉积物中潜在的木质素分解微生物和途径及其对温度升高的响应。
我们的研究表明,温度升高可通过影响木质素分解微生物的活性来提高木质素/香草醛的分解速率。这一发现表明,持续加剧的全球变暖可能会增强河流沉积物中难降解有机碳的分解,从而影响全球碳循环。视频摘要。