• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于转录组学和机器学习的心肌梗死与胃癌共同致病机制及药物靶点分析

Analysis of shared pathogenic mechanisms and drug targets in myocardial infarction and gastric cancer based on transcriptomics and machine learning.

作者信息

Ma Junyang, Hou Shufu, Gu Xinxin, Guo Peng, Zhu Jiankang

机构信息

School of Clinical Medicine, Jining Medical University, Jining, China.

Laboratory of Metabolism and Gastrointestinal Tumor, The First Affiliated Hospital of Shandong First Medical University, Jinan, China.

出版信息

Front Immunol. 2025 Mar 21;16:1533959. doi: 10.3389/fimmu.2025.1533959. eCollection 2025.

DOI:10.3389/fimmu.2025.1533959
PMID:40191191
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11968731/
Abstract

BACKGROUND

Recent studies have suggested a potential association between gastric cancer (GC) and myocardial infarction (MI), with shared pathogenic factors. This study aimed to identify these common factors and potential pharmacologic targets.

METHODS

Data from the IEU Open GWAS project were used. Two-sample Mendelian randomization (MR) analysis was used to explore the causal link between MI and GC. Transcriptome analysis identified common differentially expressed genes, followed by enrichment analysis. Drug target MR analysis and eQTLs validated these associations with GC, and the Steiger direction test confirmed their direction. The random forest and Lasso algorithms were used to identify genes with diagnostic value, leading to nomogram construction. The performance of the model was evaluated via ROC, calibration, and decision curves. Correlations between diagnostic genes and immune cell infiltration were analyzed.

RESULTS

MI was linked to increased GC risk (=1.112, =0.04). Seventy-four genes, which are related mainly to ubiquitin-dependent proteasome pathways, were commonly differentially expressed between MI and GC. Nine genes were consistently associated with GC, and eight had diagnostic value. The nomogram built on these eight genes had strong predictive performance (=0.950, validation set =0.957). Immune cell infiltration analysis revealed significant correlations between several genes and immune cells, such as T cells, macrophages, neutrophils, B cells, and dendritic cells.

CONCLUSION

MI is associated with an increased risk of developing GC, and both share common pathogenic factors. The nomogram constructed based on 8 genes with diagnostic value had good predictive performance.

摘要

背景

近期研究表明,胃癌(GC)与心肌梗死(MI)之间可能存在关联,且有共同的致病因素。本研究旨在确定这些共同因素及潜在的药物靶点。

方法

使用来自IEU Open GWAS项目的数据。采用两样本孟德尔随机化(MR)分析来探究MI与GC之间的因果关系。转录组分析确定了共同的差异表达基因,随后进行富集分析。药物靶点MR分析和表达数量性状基因座(eQTL)验证了这些与GC的关联,Steiger方向检验证实了它们的方向。使用随机森林和套索算法来识别具有诊断价值的基因,进而构建列线图。通过受试者工作特征曲线(ROC)、校准和决策曲线评估模型的性能。分析诊断基因与免疫细胞浸润之间的相关性。

结果

MI与GC风险增加相关(比值比=1.112,P=0.04)。在MI和GC之间,共有74个主要与泛素依赖性蛋白酶体途径相关的基因存在差异表达。9个基因始终与GC相关,其中8个具有诊断价值。基于这8个基因构建的列线图具有很强的预测性能(训练集AUC=0.950,验证集=0.957)。免疫细胞浸润分析显示,几个基因与免疫细胞(如T细胞、巨噬细胞、中性粒细胞、B细胞和树突状细胞)之间存在显著相关性。

结论

MI与GC发生风险增加相关,且两者具有共同的致病因素。基于8个具有诊断价值的基因构建的列线图具有良好的预测性能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/039c/11968731/bfc76ead2cd4/fimmu-16-1533959-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/039c/11968731/5291c1498b7f/fimmu-16-1533959-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/039c/11968731/a012bfd74b0c/fimmu-16-1533959-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/039c/11968731/ca6a3f513234/fimmu-16-1533959-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/039c/11968731/69996a323f9b/fimmu-16-1533959-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/039c/11968731/818f5a8efea1/fimmu-16-1533959-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/039c/11968731/708d4387a4e2/fimmu-16-1533959-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/039c/11968731/bfc76ead2cd4/fimmu-16-1533959-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/039c/11968731/5291c1498b7f/fimmu-16-1533959-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/039c/11968731/a012bfd74b0c/fimmu-16-1533959-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/039c/11968731/ca6a3f513234/fimmu-16-1533959-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/039c/11968731/69996a323f9b/fimmu-16-1533959-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/039c/11968731/818f5a8efea1/fimmu-16-1533959-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/039c/11968731/708d4387a4e2/fimmu-16-1533959-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/039c/11968731/bfc76ead2cd4/fimmu-16-1533959-g007.jpg

相似文献

1
Analysis of shared pathogenic mechanisms and drug targets in myocardial infarction and gastric cancer based on transcriptomics and machine learning.基于转录组学和机器学习的心肌梗死与胃癌共同致病机制及药物靶点分析
Front Immunol. 2025 Mar 21;16:1533959. doi: 10.3389/fimmu.2025.1533959. eCollection 2025.
2
A machine learning-based diagnostic model for myocardial infarction patients: Analysis of neutrophil extracellular traps-related genes and eQTL Mendelian randomization.基于机器学习的心肌梗死患者诊断模型:中性粒细胞胞外诱捕网相关基因和 eQTL 孟德尔随机化分析。
Medicine (Baltimore). 2024 Mar 22;103(12):e37363. doi: 10.1097/MD.0000000000037363.
3
Amino acid metabolism-related genes as potential biomarkers and the role of MATN3 in stomach adenocarcinoma: A bioinformatics, mendelian randomization and experimental validation study.氨基酸代谢相关基因作为潜在的生物标志物和 MATN3 在胃腺癌中的作用:一项基于生物信息学、孟德尔随机化和实验验证的研究。
Int Immunopharmacol. 2024 Dec 25;143(Pt 1):113253. doi: 10.1016/j.intimp.2024.113253. Epub 2024 Sep 30.
4
Identification and validation of apoptosis-related genes in acute myocardial infarction based on integrated bioinformatics methods.基于综合生物信息学方法的急性心肌梗死中凋亡相关基因的鉴定与验证
PeerJ. 2024 Dec 4;12:e18591. doi: 10.7717/peerj.18591. eCollection 2024.
5
Identification and Validation of a Novel Prognostic Signature of Gastric Cancer Based on Seven Complement System-Related Genes: An Integrated Analysis.基于七个补体系统相关基因的胃癌新型预后标志物的鉴定与验证:一项综合分析
Crit Rev Eukaryot Gene Expr. 2025;35(3):1-22. doi: 10.1615/CritRevEukaryotGeneExpr.2024057000.
6
Exploring Pathogenic Genes in Frozen Shoulder through weighted gene co-expression network analysis and Mendelian Randomization.通过加权基因共表达网络分析和孟德尔随机化探索冻结肩的致病基因。
Int J Med Sci. 2024 Oct 21;21(14):2745-2758. doi: 10.7150/ijms.98505. eCollection 2024.
7
A nomogram model based on the number of examined lymph nodes-related signature to predict prognosis and guide clinical therapy in gastric cancer.基于检查淋巴结数量相关特征的列线图模型预测胃癌的预后并指导临床治疗。
Front Immunol. 2022 Nov 2;13:947802. doi: 10.3389/fimmu.2022.947802. eCollection 2022.
8
​Comprehensive mendelian randomization analysis of plasma proteomics to identify new therapeutic targets for the treatment of coronary heart disease and myocardial infarction.综合孟德尔随机化分析血浆蛋白质组学,以确定治疗冠心病和心肌梗死的新治疗靶点。
J Transl Med. 2024 Apr 30;22(1):404. doi: 10.1186/s12967-024-05178-8.
9
Exploring T-cell exhaustion features in Acute myocardial infarction for a Novel Diagnostic model and new therapeutic targets by bio-informatics and machine learning.通过生物信息学和机器学习探索急性心肌梗死中 T 细胞耗竭的特征,建立新的诊断模型和治疗靶点。
BMC Cardiovasc Disord. 2024 May 24;24(1):272. doi: 10.1186/s12872-024-03907-x.
10
Integrated approach of machine learning, Mendelian randomization and experimental validation for biomarker discovery in diabetic nephropathy.基于机器学习、孟德尔随机化和实验验证的综合方法在糖尿病肾病生物标志物发现中的应用。
Diabetes Obes Metab. 2024 Dec;26(12):5646-5660. doi: 10.1111/dom.15933. Epub 2024 Oct 6.

本文引用的文献

1
Mendelian Randomization and Bayesian Colocalization Analysis Implicate Glycoprotein VI as a Potential Drug Target for Cardioembolic Stroke in South Asian Populations.孟德尔随机化和贝叶斯共定位分析提示糖蛋白 VI 可能成为南亚人群心源性栓塞性卒中的潜在药物靶点。
J Am Heart Assoc. 2024 Aug 20;13(16):e035008. doi: 10.1161/JAHA.124.035008. Epub 2024 Aug 9.
2
Rho GTPase activating protein 21-mediated regulation of prostate cancer associated 3 gene in prostate cancer cell.Rho GTPase 激活蛋白 21 介导调控前列腺癌细胞中前列腺癌相关基因 3。
Braz J Med Biol Res. 2024 Jun 17;57:e13190. doi: 10.1590/1414-431X2024e13190. eCollection 2024.
3
Causal relationship between ulcerative colitis and male infertility: A two-sample Mendelian randomization study.
溃疡性结肠炎与男性不育症之间的因果关系:一项两样本孟德尔随机化研究。
PLoS One. 2024 May 30;19(5):e0303827. doi: 10.1371/journal.pone.0303827. eCollection 2024.
4
Posture-induced modulation of lower-limb joint powers in perturbed running.姿势对扰动跑步中下肢关节功率的调节作用。
PLoS One. 2024 May 14;19(5):e0302867. doi: 10.1371/journal.pone.0302867. eCollection 2024.
5
Crosstalk between ubiquitin ligases and ncRNAs drives cardiovascular disease progression.泛素连接酶和非编码 RNA 之间的串扰促进心血管疾病的进展。
Front Immunol. 2024 Mar 7;15:1335519. doi: 10.3389/fimmu.2024.1335519. eCollection 2024.
6
Ubiquitin-specific proteases: From biological functions to potential therapeutic applications in gastric cancer.泛素特异性蛋白酶:从生物学功能到胃癌潜在的治疗应用。
Biomed Pharmacother. 2024 Apr;173:116323. doi: 10.1016/j.biopha.2024.116323. Epub 2024 Feb 23.
7
Investigation of Molecular Mechanisms of S-1, Docetaxel and Cisplatin in Gastric Cancer with a History of Helicobacter Pylori Infection.探讨幽门螺杆菌感染史胃癌患者中 S-1、多西他赛和顺铂的分子机制。
Mol Biotechnol. 2024 May;66(5):1303-1313. doi: 10.1007/s12033-023-01032-2. Epub 2024 Jan 25.
8
Overexpression of MTFR1 promotes cancer progression and drug-resistance on cisplatin and is related to the immune microenvironment in lung adenocarcinoma.MTFR1 过表达促进肺腺癌中顺铂的癌症进展和耐药性,并与免疫微环境相关。
Aging (Albany NY). 2024 Jan 2;16(1):66-88. doi: 10.18632/aging.205338.
9
Body composition and risk of gestational diabetes mellitus: A univariable and multivariable Mendelian randomization study.体成分与妊娠期糖尿病发病风险:单变量和多变量孟德尔随机化研究。
J Diabetes Investig. 2024 Mar;15(3):346-354. doi: 10.1111/jdi.14115. Epub 2023 Nov 27.
10
Epidemiology, risk areas and macro determinants of gastric cancer: a study based on geospatial analysis.胃癌的流行病学、风险区域和宏观决定因素:基于地理空间分析的研究。
Int J Health Geogr. 2023 Nov 25;22(1):32. doi: 10.1186/s12942-023-00356-1.